View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_59 (Length: 242)
Name: NF1894_high_59
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 24116972 - 24117201
Alignment:
| Q |
1 |
cgaaagaacacgatcgagtacgttgacacaaagatagagggtttctggcatgagtttttgttcatagtgtgtttgtattaaccaatctacaacattcttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24116972 |
cgaaagaacacgatcgagtacgttgacacaaagatagagggtttctggcatgagtttttgttcatagtgtgtttgtattaaccaatctacaacattcttt |
24117071 |
T |
|
| Q |
101 |
cttatttgaaaatctaccttaaacccttttgagttggccctaatctgagactcttcaagatgatagaacttatagagatcatcatcataatcagtaaacn |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24117072 |
ctcatttgaaaatctaccttaaacccttttgagttggccctaatctgagactcttcaagatgatagaacttatagagatcatcatcataatcagtaaact |
24117171 |
T |
|
| Q |
201 |
nnnnnncattgcagatgagtttttcagaat |
230 |
Q |
| |
|
| ||| |||||||||||||||||| |
|
|
| T |
24117172 |
ttttttccttggagatgagtttttcagaat |
24117201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 24614402 - 24614177
Alignment:
| Q |
1 |
cgaaagaacacgatcgagtacgttgacacaaagatagagggtttctggcatgagtttttgttcatagtgtgtttgtattaaccaatctacaacattcttt |
100 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
24614402 |
cgaaagaacgcgatcgagtatgttgacacaaagatatagggtttctggcatgagtttttgttcatagtgtgtttgtattaaccaatctacaacattcatt |
24614303 |
T |
|
| Q |
101 |
cttatttgaaaatctaccttaaacccttttgagttggccctaatctgagactcttcaagatgatagaacttatagagatcatcatcataatcagtaaacn |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24614302 |
ctcatttgaaaatctaccttaaacccttttgagttggccctaatctgagactcttcaagatgatagaacttatagagatcatcatcataatccgtaaact |
24614203 |
T |
|
| Q |
201 |
nnnnnncattgcagatgagtttttca |
226 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
24614202 |
ttttttcattgcagatgagtttttca |
24614177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 24109266 - 24109456
Alignment:
| Q |
2 |
gaaagaacacgatcgagtacgttgacacaaagatagagggtttctggcatgagtttttgttcatagtgtgtttgtattaaccaatctacaacattctttc |
101 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| | |||| |
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|
| T |
24109266 |
gaaagaaatcgatcaagtatgttgacacaaagatagagggtttctggcatgagtttttgtttatagtgtgtttgtatcaaccaatctacgacaatttttc |
24109365 |
T |
|
| Q |
102 |
ttatttgaaaatctaccttaaacccttttgagttggccctaatctgagactcttcaagatgatagaacttatagagatcatcatcataatc |
192 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||| |||||||||||||| ||||| |
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|
| T |
24109366 |
tcattagaaaatctaccttaaacccttttgagtttgccctaatttgagactcttcaatatgataaaacttgtagagatcatcatcgtaatc |
24109456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 23689482 - 23689305
Alignment:
| Q |
22 |
gttgacacaaagatagagggtttctggcatgagtttttgttcatagtgtgtttgtattaaccaatctacaacattctttcttatttgaaaatctacctta |
121 |
Q |
| |
|
||||||||| ||||| | ||||| ||||| || |||||||| |||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||| |
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|
| T |
23689482 |
gttgacacagagataaaacgtttccggcatcagcttttgttcgtagtgtgtttgtatcaaccaatctacgacattctttctaatttgagaatctaccttg |
23689383 |
T |
|
| Q |
122 |
aacccttttgagttggccctaatctgagactcttcaagatgatagaacttatagagatcatcatcataatcagtaaac |
199 |
Q |
| |
|
||||| |||||||| || || |||||||||||||| ||||| || || || |||||||||||||||||| ||||| |
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|
| T |
23689382 |
aacccgtttgagtttccctggatttgagactcttcaaggtgataaaatttgtatagatcatcatcataatcactaaac |
23689305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 24061719 - 24061542
Alignment:
| Q |
22 |
gttgacacaaagatagagggtttctggcatgagtttttgttcatagtgtgtttgtattaaccaatctacaacattctttcttatttgaaaatctacctta |
121 |
Q |
| |
|
||||||||| ||||| | ||||| ||||| || |||||||| |||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||| |
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|
| T |
24061719 |
gttgacacagagataaaacgtttccggcatcagcttttgttcgtagtgtgtttgtatcaaccaatctacgacattctttctaatttgagaatctaccttg |
24061620 |
T |
|
| Q |
122 |
aacccttttgagttggccctaatctgagactcttcaagatgatagaacttatagagatcatcatcataatcagtaaac |
199 |
Q |
| |
|
||||| |||||||| || || |||||||||||||| ||||| || || || |||||||||||||||||| ||||| |
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|
| T |
24061619 |
aacccgtttgagtttccctggatttgagactcttcaaggtgataaaatttgtatagatcatcatcataatcactaaac |
24061542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 23692940 - 23692733
Alignment:
| Q |
22 |
gttgacacaaagatagagggtttctggcatgagtttttgttcatagtgtgtttgtattaaccaatctacaacattctttcttatttgaaaatctacctta |
121 |
Q |
| |
|
||||||||| ||||| || ||||| ||||| | |||||||| |||||||||||||| ||||||||||| ||||||||||| | |||| |||||||||| |
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|
| T |
23692940 |
gttgacacagagataaagcgtttccggcatcaatttttgttggtagtgtgtttgtatcaaccaatctaccacattctttctcagttgagaatctaccttg |
23692841 |
T |
|
| Q |
122 |
aacccttttgagttggccctaatctgagactcttcaagatgatagaacttatagagatcatcatcataatcagtaaacnnnnnnncattgcagatgagtt |
221 |
Q |
| |
|
| ||| |||||||| | | || |||||||||||||||||||| | | || |||||||||||||||||| || || ||||| ||||||||| |
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|
| T |
23692840 |
agcccgtttgagtttccgttgatttgagactcttcaagatgataatattggtatagatcatcatcataatcactatactttttttcattggagatgagtt |
23692741 |
T |
|
| Q |
222 |
tttcagaa |
229 |
Q |
| |
|
|||||||| |
|
|
| T |
23692740 |
tttcagaa |
23692733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 23711380 - 23711173
Alignment:
| Q |
22 |
gttgacacaaagatagagggtttctggcatgagtttttgttcatagtgtgtttgtattaaccaatctacaacattctttcttatttgaaaatctacctta |
121 |
Q |
| |
|
||||||||| ||||| || ||||| ||||| | |||||||| |||||||||||||| ||||||||||| ||||||||||| | |||| |||||||||| |
|
|
| T |
23711380 |
gttgacacagagataaagcgtttccggcatcaatttttgttggtagtgtgtttgtatcaaccaatctaccacattctttctcagttgagaatctaccttg |
23711281 |
T |
|
| Q |
122 |
aacccttttgagttggccctaatctgagactcttcaagatgatagaacttatagagatcatcatcataatcagtaaacnnnnnnncattgcagatgagtt |
221 |
Q |
| |
|
| ||| |||||||| | | || |||||||||||||||||||| | | || |||||||||||||||||| || || ||||| ||||||||| |
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|
| T |
23711280 |
agcccgtttgagtttccgttgatttgagactcttcaagatgataatattggtatagatcatcatcataatcactatactttttttcattggagatgagtt |
23711181 |
T |
|
| Q |
222 |
tttcagaa |
229 |
Q |
| |
|
|||||||| |
|
|
| T |
23711180 |
tttcagaa |
23711173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 23729836 - 23729629
Alignment:
| Q |
22 |
gttgacacaaagatagagggtttctggcatgagtttttgttcatagtgtgtttgtattaaccaatctacaacattctttcttatttgaaaatctacctta |
121 |
Q |
| |
|
||||||||| ||||| || ||||| ||||| | |||||||| |||||||||||||| ||||||||||| ||||||||||| | |||| |||||||||| |
|
|
| T |
23729836 |
gttgacacagagataaagcgtttccggcatcaatttttgttggtagtgtgtttgtatcaaccaatctaccacattctttctcagttgagaatctaccttg |
23729737 |
T |
|
| Q |
122 |
aacccttttgagttggccctaatctgagactcttcaagatgatagaacttatagagatcatcatcataatcagtaaacnnnnnnncattgcagatgagtt |
221 |
Q |
| |
|
| ||| |||||||| | | || |||||||||||||||||||| | | || |||||||||||||||||| || || ||||| ||||||||| |
|
|
| T |
23729736 |
agcccgtttgagtttccgttgatttgagactcttcaagatgataatattggtatagatcatcatcataatcactatactttttttcattggagatgagtt |
23729637 |
T |
|
| Q |
222 |
tttcagaa |
229 |
Q |
| |
|
|||||||| |
|
|
| T |
23729636 |
tttcagaa |
23729629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 23748291 - 23748084
Alignment:
| Q |
22 |
gttgacacaaagatagagggtttctggcatgagtttttgttcatagtgtgtttgtattaaccaatctacaacattctttcttatttgaaaatctacctta |
121 |
Q |
| |
|
||||||||| ||||| || ||||| ||||| | |||||||| |||||||||||||| ||||||||||| ||||||||||| | |||| |||||||||| |
|
|
| T |
23748291 |
gttgacacagagataaagcgtttccggcatcaatttttgttggtagtgtgtttgtatcaaccaatctaccacattctttctcagttgagaatctaccttg |
23748192 |
T |
|
| Q |
122 |
aacccttttgagttggccctaatctgagactcttcaagatgatagaacttatagagatcatcatcataatcagtaaacnnnnnnncattgcagatgagtt |
221 |
Q |
| |
|
| ||| |||||||| | | || |||||||||||||||||||| | | || |||||||||||||||||| || || ||||| ||||||||| |
|
|
| T |
23748191 |
agcccgtttgagtttccgttgatttgagactcttcaagatgataatattggtatagatcatcatcataatcactatactttttttcattggagatgagtt |
23748092 |
T |
|
| Q |
222 |
tttcagaa |
229 |
Q |
| |
|
|||||||| |
|
|
| T |
23748091 |
tttcagaa |
23748084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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