View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_60 (Length: 241)
Name: NF1894_high_60
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_60 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 27511502 - 27511403
Alignment:
| Q |
142 |
gctgtgtttgatctgttcatgaaacaagttgtcttcaacaaaaaggtgattcgaatcattcaaagccgctaccattggagagagacagaggattatatgc |
241 |
Q |
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| T |
27511502 |
gctgtgtttgatctgttcatgaatcaagtcgtcttcaacaaaaaggtgattcgaatcattcaaagccgctaccattggagagagacagaggattatatgc |
27511403 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 27511619 - 27511586
Alignment:
| Q |
19 |
acactaaccgcaatggtcttgtctcaggtagatg |
52 |
Q |
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| T |
27511619 |
acactaaccgcaatggtcttgtctcaggtagatg |
27511586 |
T |
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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 77779 - 77826
Alignment:
| Q |
192 |
tcgaatcattcaaagccgctaccattggagagagacagaggattatatgc |
241 |
Q |
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| T |
77779 |
tcgaatcattcaaagccgctaacgttggagagagac--aggattatatgc |
77826 |
T |
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