View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_65 (Length: 228)
Name: NF1894_high_65
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_65 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30154259 - 30154036
Alignment:
| Q |
1 |
gttacggtgttatttgagtacctaacattggtgctttgctacaataaacacttattctcctatgatgtagagagtcgctgctactatttcatttaggtgt |
100 |
Q |
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| T |
30154259 |
gttacggtgttatttgagtacctaacattggtgctttgctacaataaacacttattctcctatgatgtagagagtcgctgctactatttcatttaggtgt |
30154160 |
T |
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| Q |
101 |
tccctcttcttctccatttatgtacaaaactttgttccatcactcccttctttgttctcaagctacaataccaaattagatgagattggtgctaaccata |
200 |
Q |
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| T |
30154159 |
tccctcttcccctccatttatgtgcaaaactttgttccatcactcccttctttgttctcaagctacaataccaaattagatgagattggtgctaaccata |
30154060 |
T |
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| Q |
201 |
tccttataagttataacctttgct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
30154059 |
tccttataagttataacctttgct |
30154036 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 20818957 - 20818995
Alignment:
| Q |
20 |
acctaacattggtgctttgctacaataaacacttattct |
58 |
Q |
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| T |
20818957 |
acctaacattggtgctttgctccaagaaacacttattct |
20818995 |
T |
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