View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_66 (Length: 226)
Name: NF1894_high_66
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_66 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1554223 - 1554444
Alignment:
| Q |
1 |
tatagaactatagttgaaacagatatattctcatgctgtaattgtatttgtcaactagttagtttattattacacttatctgactgaaattttgtcaac- |
99 |
Q |
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| T |
1554223 |
tatagaactatagttgaaacagatatattctcatgctgtaattgtatttgtcaactagttagtttattattacacttatctgactgaaattttgtcaact |
1554322 |
T |
|
| Q |
100 |
-ttacacaatgttcttattgatacaataaatttaagcattcaaaagcattaagtgatcaaatcatcttgtaacgtgactctacnnnnnnnctgtgtcgaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
1554323 |
tttacacaatgttcttattgatacaataaatttaagcattcaaaagcattaagtgatcaaatcatcttgtaaagtgactctacaaaaaaactgtgtcgaa |
1554422 |
T |
|
| Q |
199 |
atagaagttacttgatcacttc |
220 |
Q |
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|||||||||||||||||||||| |
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| T |
1554423 |
atagaagttacttgatcacttc |
1554444 |
T |
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