View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1894_high_68 (Length: 223)

Name: NF1894_high_68
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1894_high_68
NF1894_high_68
[»] chr8 (1 HSPs)
chr8 (7-223)||(30154840-30155058)
[»] chr7 (3 HSPs)
chr7 (29-126)||(20954924-20955021)
chr7 (31-118)||(36423092-36423180)
chr7 (77-118)||(46142968-46143009)
[»] chr2 (3 HSPs)
chr2 (59-117)||(12294767-12294825)
chr2 (39-118)||(3271546-3271625)
chr2 (28-103)||(11789258-11789333)
[»] chr1 (2 HSPs)
chr1 (78-119)||(42883918-42883959)
chr1 (48-109)||(35634580-35634641)
[»] chr6 (1 HSPs)
chr6 (60-129)||(6455708-6455777)
[»] chr3 (2 HSPs)
chr3 (35-115)||(2907890-2907970)
chr3 (77-129)||(45985088-45985140)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 30155058 - 30154840
Alignment:
Q  7 aatgtgaagaaatgttggattaatagagtgtttggatctgcgtttaaagcttgattctcacgtccctgaacaattttgccgtgaaaataaagaagctaca 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||    
T  30155058 aatgtgaagaaatgttggattaatagagtgtttggatatgcgtttaaagcttgattctcgcatccctaaacaattttaccgtgaaaataaagaagctaca 30154959  T
Q  107 aaatgtagcatcgatgcaaacgtccg--nnnnnnnggtttccacagcttcaactaacacatgctaagtttaacnnnnnnnnnnnnaaaataactaaatca 204  Q
    ||||||||||||| | ||||||| ||         ||||||||| |||||||| |||||||||||||||||||            |||||||||||||||    
T  30154958 aaatgtagcatcggtacaaacgtacgtttttttttggtttccacggcttcaacaaacacatgctaagtttaacttttttatttttaaaataactaaatca 30154859  T
Q  205 taaagtccatacattcata 223  Q
    |||||||||||||||||||    
T  30154858 taaagtccatacattcata 30154840  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 20955021 - 20954924
Alignment:
Q  29 atagagtgtttggatctgcgtttaaagcttgattctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaatgtagcatcgatgcaaa 126  Q
    |||||||||| |||| |||||||||||||||| ||||  ||||||   || |||| ||||| ||||||||||||||||||||||||||||| ||||||    
T  20955021 atagagtgttcggatatgcgtttaaagcttgaatctcgggtccctaggcagttttaccgtggaaataaagaagctacaaaatgtagcatcggtgcaaa 20954924  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 36423180 - 36423092
Alignment:
Q  31 agagtgtttggatctgcgtttaaagcttgattctcacgtccctgaacaa-ttttgccgtgaaaataaagaagctacaaaatgtagcatc 118  Q
    ||||||||||||||||||| |||||||||||||||| ||||||  |||| ||||  ||| |||||||||||| ||||||||||||||||    
T  36423180 agagtgtttggatctgcgtataaagcttgattctcatgtccctagacaatttttttcgtaaaaataaagaaggtacaaaatgtagcatc 36423092  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 46143009 - 46142968
Alignment:
Q  77 caattttgccgtgaaaataaagaagctacaaaatgtagcatc 118  Q
    |||||||||||||||||||| ||||||| ||||| |||||||    
T  46143009 caattttgccgtgaaaataaggaagctataaaatatagcatc 46142968  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 12294825 - 12294767
Alignment:
Q  59 gattctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaatgtagcat 117  Q
    |||||||||||||||   ||||||||||||||||||||  |||||||||||||||||||    
T  12294825 gattctcacgtccctaggcaattttgccgtgaaaataacaaagctacaaaatgtagcat 12294767  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 3271546 - 3271625
Alignment:
Q  39 tggatctgcgtttaaagcttgattctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaatgtagcatc 118  Q
    ||||||||||||||||||   |||||| |||| |    ||||||| |||||||||| ||||||||||||||| |||||||    
T  3271546 tggatctgcgtttaaagcgaaattctcgcgtctcaaggcaattttaccgtgaaaatcaagaagctacaaaatatagcatc 3271625  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 11789333 - 11789258
Alignment:
Q  28 aatagagtgtttggatctgcgtttaaagcttgattctcacgtccctgaacaattttgccgtgaaaataaagaagct 103  Q
    |||| ||||||| ||| ||| ||||||| ||||||| | ||||| |  |||||||||||||| |||||||||||||    
T  11789333 aataaagtgtttagatttgcatttaaagtttgattcccgcgtccttagacaattttgccgtggaaataaagaagct 11789258  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 42883959 - 42883918
Alignment:
Q  78 aattttgccgtgaaaataaagaagctacaaaatgtagcatcg 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  42883959 aattttgccgtgaaaataaggaagctacaaaatgtagcatcg 42883918  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 35634580 - 35634641
Alignment:
Q  48 gtttaaagcttgattctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaa 109  Q
    |||||||| ||||||||| | ||||| | ||||||||  |||||||||||||||||| ||||    
T  35634580 gtttaaagtttgattctcgcatccctaatcaattttgatgtgaaaataaagaagctataaaa 35634641  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 6455777 - 6455708
Alignment:
Q  60 attctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaatgtagcatcgatgcaaacgt 129  Q
    |||||| | ||||| | ||||||| ||||||||||||  ||||||||||||||||||||  |||||||||    
T  6455777 attctcgcatccctaagcaatttttccgtgaaaataacaaagctacaaaatgtagcatcagtgcaaacgt 6455708  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 2907970 - 2907890
Alignment:
Q  35 tgtttggatctgcgtttaaagcttgattctcacgtccctgaacaattttgccgtgaaaataaagaagctacaaaatgtagc 115  Q
    ||||||| ||| |||||||||  || ||||| ||| |||  |||||||||  |||||||||||||||||| |||| |||||    
T  2907970 tgtttgggtctacgtttaaaggctggttctcgcgttcctagacaattttgatgtgaaaataaagaagctataaaaggtagc 2907890  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 45985140 - 45985088
Alignment:
Q  77 caattttgccgtgaaaataaagaagctacaaaatgtagcatcgatgcaaacgt 129  Q
    ||||||||||||||||||||  ||||| |||||||||| ||| || |||||||    
T  45985140 caattttgccgtgaaaataacaaagctgcaaaatgtagaatcaatccaaacgt 45985088  T

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