View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_71 (Length: 216)
Name: NF1894_high_71
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_71 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 42348821 - 42349003
Alignment:
| Q |
16 |
agagaatggggaattgtggacaagaaatcccctttgagacacagttcttgcttattgaagcacataagggttgtgatattgagggagggatcgacaatgg |
115 |
Q |
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| T |
42348821 |
agagaatggggaattgtggacaagaaatcccctttgagacacagttcttgcttattgaagcacataagggttgtgatattgagggagggatcgacaatgg |
42348920 |
T |
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| Q |
116 |
agaacaagaccaagacggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatg |
198 |
Q |
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| T |
42348921 |
agaacaagaccaagatggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatg |
42349003 |
T |
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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 19057201 - 19057273
Alignment:
| Q |
126 |
caagacggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatg |
198 |
Q |
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| T |
19057201 |
caagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatg |
19057273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 50804987 - 50804915
Alignment:
| Q |
126 |
caagacggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatg |
198 |
Q |
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| T |
50804987 |
caagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatg |
50804915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 50870890 - 50870962
Alignment:
| Q |
126 |
caagacggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatg |
198 |
Q |
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| T |
50870890 |
caagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatg |
50870962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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