View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_72 (Length: 212)
Name: NF1894_high_72
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_72 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 2945820 - 2945609
Alignment:
| Q |
1 |
caaattatccacatgttttttatgtctatgcttgtgcgtttctttctgaacatggtgtaaatgattaaaataatcagaattcccttcagaatgtttgtgc |
100 |
Q |
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| T |
2945820 |
caaattatccacatgttttctatgtctatgcttgtgcgtttctttctgaacatggtgtaaatgattaaaataatcagaattcccttcagaatgtttgtgc |
2945721 |
T |
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| Q |
101 |
ttgtgattgtgttcataactggtctttcgcctatttggagcacgatgattcaggtgcctgacctcttgtttacgatgtttgttgtcatgaatatggtgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2945720 |
ttgtgattgtgttcataactggtctttcgcctatttggagcacgatgattcaggtgcctgacctcttgtttacgatgtttgttgtcatgaatatggtgat |
2945621 |
T |
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| Q |
201 |
gtgtctggttaa |
212 |
Q |
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|||||||||||| |
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| T |
2945620 |
gtgtctggttaa |
2945609 |
T |
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