View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_73 (Length: 205)
Name: NF1894_high_73
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_73 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 2590530 - 2590345
Alignment:
| Q |
17 |
catatatcagtgtatgtgtgcaagtgcaagt------gcaatgcaatagttatctctttctctttctatctttccttcttttaaaactgagggaactgaa |
110 |
Q |
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| T |
2590530 |
catatatcagtgtatgtgtgcaagtgcaagtgcaagtgcaatgcaatagttatctctttctctttctatctttccttcttttaaaactgagggaactgaa |
2590431 |
T |
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| Q |
111 |
gtcgacatttacaacctgcatgtaggacccatatctccatctaaccctaaagtgacgttccatcaactttattctagcaatattct |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2590430 |
gtcgacatttacaacctgcatgtaggacccatatctccatctaaccctaaagtgacgttccatcaactttattctagcaattttct |
2590345 |
T |
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