View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_1 (Length: 1106)
Name: NF1894_low_1
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Complemental strand, 35190234 - 35189624
Alignment:
| Q |
18 |
gctataagagtctaattaagctgattagcccaaaccagggcaaacaataccaacttcgataacacattttcagatgcaaaacattccaatcttctaatga |
117 |
Q |
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| T |
35190234 |
gctataagagtctaattaagctgattagcccaaaccagggcaaacaacaccaacttggataacacattttcagatgcaaaacattccaatcttctaatga |
35190135 |
T |
|
| Q |
118 |
gaagcagagggcacagtaactgagaaaaaattgaagcaactatttggataaaatccatgaagaatttttataattagatggattcactcaatgattctta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35190134 |
gaagcagagggcacagtaactgagaaaaaattgaagcaactatttggataaaatccatgaagaatttttataattagatggattaactcaatgattctta |
35190035 |
T |
|
| Q |
218 |
agtgaactaacaagataacatcaacggttagtttgaattaaccaccaaattagtatttgactttataggacactcttaaacatgtcctcaaattacgaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35190034 |
agtgaactaacaagataacatcaacggttagtttgaattaaccacaaaattagtatttgactttataggacactcttaaacatgtcctcaaattacgaat |
35189935 |
T |
|
| Q |
318 |
atttcttaaagatcttcgactctgttaaaccattaagttgatccctacatttaacgagttactatcaattaggtcctgtattttaacaa-ttattatcaa |
416 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35189934 |
atttcttaaagatctccgactctgttaaaccattaagttgatccctacatttaacgagttactatcaattaggtcctgtattttaacaacttattatcaa |
35189835 |
T |
|
| Q |
417 |
tctggtctctatactatttattttaggggatctctatactattcaaccacttagtgtcgattcctagcatactctcaaaatgactaatacaagtaaattt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35189834 |
tctggtctctatactatttattttaggggatctctatactattcaaccacttagtgtcaattcctagcatactctcaaaatgaccaatacaagtaaattt |
35189735 |
T |
|
| Q |
517 |
tgacggagtnnnnnnnctttttgaaatattcataatatcatgaaactattgtagagcgtcttacaaagtagggacgaatttggcggtttagtcggtttga |
616 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35189734 |
tgacggagtaaaaaaactttttgaaatattcataatatcatggaactattgtagagcgtcttacaaagtagggacgaatttggcggtttagtcggtttga |
35189635 |
T |
|
| Q |
617 |
ggagtgagtgt |
627 |
Q |
| |
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||||||||||| |
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| T |
35189634 |
ggagtgagtgt |
35189624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 694 - 1097
Target Start/End: Complemental strand, 35189563 - 35189165
Alignment:
| Q |
694 |
ttaccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaattt |
793 |
Q |
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| T |
35189563 |
ttaccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaattt |
35189464 |
T |
|
| Q |
794 |
cccactcttctctttgctccatgttattaccaccagtagtagcaatagagtttgagtgatcatgagaagaatcatcatttaccttgttgaagtgtttctc |
893 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35189463 |
cccactcttctctttgctccatgttattaccaccagtagtagcaatagagtttgagtgatcatgagaagaatcatcatttaccttgttgaagtgtttctc |
35189364 |
T |
|
| Q |
894 |
aagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatcattcatttttccacaccctatcttctgaggatgtgattgattattg |
993 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35189363 |
aagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatcattcatttttccacaccctatcttctgagaatgtgattgattattg |
35189264 |
T |
|
| Q |
994 |
gtgcagcataaatagaatagaatagaatagaggggacattgattgtggtaaaatgtagtattatggtggatagagagagtgtttgagttgtcgtttgatg |
1093 |
Q |
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| T |
35189263 |
gtgcagcataaatagaatagaa-----tagaggggacattgattgtggtaaaatgtagtattatggtggatagagagagtgtttgagttgtcgtttgatg |
35189169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 696 - 797
Target Start/End: Complemental strand, 43970925 - 43970824
Alignment:
| Q |
696 |
accagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttcc |
795 |
Q |
| |
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||||||||||||||| |||||| | |||||| |||||||| || |||||||||||||| | ||||| ||||||||||| |||||||||||||||||| |
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| T |
43970925 |
accagcaacatcttgagtatcataaacaccacgatgaacagtgccaaaagtgccacgagcaataacacttttgatgatgagtttagaaggatcaatttcc |
43970826 |
T |
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| Q |
796 |
ca |
797 |
Q |
| |
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|| |
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|
| T |
43970825 |
ca |
43970824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 874 - 948
Target Start/End: Complemental strand, 43970669 - 43970595
Alignment:
| Q |
874 |
accttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatca |
948 |
Q |
| |
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|||||||||| ||| | ||||| |||||||| ||| |||| |||||||| ||||| ||||| |||||||||||| |
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| T |
43970669 |
accttgttgagatgtctttcaagctgttcatcgatgcttttcagatcaatctgatctgctcttacaaacccatca |
43970595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 695 - 802
Target Start/End: Complemental strand, 1663862 - 1663755
Alignment:
| Q |
695 |
taccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttc |
794 |
Q |
| |
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|||||||||||||| ||||||||| | |||||| ||||||||||| ||||| |||||||| | |||| | ||||| || || |||||||||||||| || |
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| T |
1663862 |
taccagcaacatctatgccatcataaacaccacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctc |
1663763 |
T |
|
| Q |
795 |
ccactctt |
802 |
Q |
| |
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||| |||| |
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| T |
1663762 |
ccattctt |
1663755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 4791270 - 4791343
Alignment:
| Q |
534 |
tttttgaaatattcataatatcatgaaactattgtagagcgtcttacaaagt-agggacgaatttggcggttta |
606 |
Q |
| |
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||||||||||||||||||| |||||||||||||| || || || |||||||| | |||| ||||||| |||||| |
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| T |
4791270 |
tttttgaaatattcataatctcatgaaactattgaagtgcatcatacaaagtcaaggactaatttggtggttta |
4791343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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