View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_16 (Length: 422)
Name: NF1894_low_16
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 33443736 - 33443342
Alignment:
| Q |
16 |
cacatgttcagaagctaaaaaagtggatatagtaattaaactggttagtatattaatggattaaatttaagtttcagaaacatataatgagaaaaatgta |
115 |
Q |
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| T |
33443736 |
cacatgttcagaagctaaaaaagtggatatagtaattaaactggttagtatattaatggattaaatttaagtttcagaaacata--atgagaaaaaagta |
33443639 |
T |
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| Q |
116 |
tgtaatgtagtatagtatagt----------gatcatactcaaggtagccatctctctatccaaacttaactcaacagcaagtaactattaaaggaaaag |
205 |
Q |
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| T |
33443638 |
tgtaatgtagtatagtatagtatagtatagtgatcatactcaaggtagccatctttctatccaaacttaactcaacagcgagtaactattaaaggaaaag |
33443539 |
T |
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| Q |
206 |
gctttcatagattgaatttcctatgatatttgtcatggttggagagaaagatatatattacaaagtttttattttattttataatattacaatgaagtat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33443538 |
gctttcatagattgaatttcctatgatatttgtcatggttggagagaaagatatatatt--------------------tataatattacaatgaagtat |
33443459 |
T |
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| Q |
306 |
gaaaatgttgagtaatattaatggtgtctttaaataaatgaattcatggttctttactagacaccttgctgcaatccaaaatagagaccctataaagggt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443458 |
gaaaatgttgagtaatattaatggtgtctttaaataaatgaattcatggttctttactagacaccttgctgcaatccaaaatagagaccctataaagggt |
33443359 |
T |
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