View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_17 (Length: 417)
Name: NF1894_low_17
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 4074091 - 4074500
Alignment:
| Q |
18 |
cctctctcaagaaaataaaccgacacaagctagtcccctaaatcaaaaaatttcaacaa-cttga--------cactaaagtaaatagctttgaaacaac |
108 |
Q |
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| T |
4074091 |
cctctctcaagaaaataaaccgacacaagctagtcccctaaatcaaaaaaattcaacaaacgtgaagatgagacattaacgtaaatagctttgaaacaac |
4074190 |
T |
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| Q |
109 |
ttgacactctctatcaattagaagaaatggttaaggaagaaggagaaagaggtataaactttcttatataataattcaaaatataatttggggtccaaat |
208 |
Q |
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| T |
4074191 |
ttgacactctatatcaattagaagaaatggttaaggaagaaggagaaagaagtataaactttcttatataataattcaaaatataatttggggtccaaat |
4074290 |
T |
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| Q |
209 |
tgttcatgaaatacaatattaaaattgttgtcttctactttacattcagttttcctagatgtgatagttggtg-aaaaaagggagcatctatgcttctaa |
307 |
Q |
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| T |
4074291 |
tgttcatgaaatacaatatcaaaattgttgtcttctactttacattcagttttcctagatgtgatagttggtgaaaaaaagggagcatctatgcttctaa |
4074390 |
T |
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| Q |
308 |
aaacttcaactttaggtgcttc----------caggaggtaaattaagtctagcaaatgattgttccagttgggatatgaacttctactatcgatttgtc |
397 |
Q |
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| T |
4074391 |
aaacttcaactttaggtgcttcaaagtttggtcaggaggtaaattaagtctagcaaatgattgttccagttgggatatgaacttctcctatcgatttgtc |
4074490 |
T |
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| Q |
398 |
aatctctgtg |
407 |
Q |
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| T |
4074491 |
aatctctgtg |
4074500 |
T |
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