View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_19 (Length: 396)
Name: NF1894_low_19
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 37353871 - 37353492
Alignment:
| Q |
1 |
ttctatctctggatttgtgctagactaagacctttgatctaccatcccacataacacaaatcacatcattagtagccattaactatttgacaattgatca |
100 |
Q |
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| T |
37353871 |
ttctatctctggatttgtgctagactaagacctttgatctaccatcccacataacacaaatcacatcattagtagccattaactatttgacaattggtca |
37353772 |
T |
|
| Q |
101 |
cctaacctgtgatgataaaccaattttaaagccatgttcagataattaatgaatgattgtcatttcaatctagctagtggcaaagtttataccaatatta |
200 |
Q |
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| T |
37353771 |
cctaacctgtgatgataaaccaattttaaagccatgttcagataattaatgaatgattgtcatttcaatctagctagtggcaaagtttataccaatatta |
37353672 |
T |
|
| Q |
201 |
ggcataaatgaatcctatttctcttgttctttatcccataattatagtctaatccaacctagtcaatctcaaaaacattgattttgccatggtaatggca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37353671 |
ggcataaatgaatcctatttctcttgttctttatcccataattatagtctaatccaacctagtcaatctcaaaaacattgattttgccatggtaatggca |
37353572 |
T |
|
| Q |
301 |
tgcaattacacaaagatcactgtcaacaggccactagttcacccatttacattattgcttcatgatggtgacttgcaaag |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37353571 |
tgcaattacacaaagatcactgtcaacaggccactagttcacccatttacattattgcttcatgatggtgacttgcaaag |
37353492 |
T |
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