View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1894_low_21 (Length: 387)

Name: NF1894_low_21
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1894_low_21
NF1894_low_21
[»] chr1 (13 HSPs)
chr1 (17-382)||(1815373-1815738)
chr1 (81-378)||(1857310-1857606)
chr1 (81-382)||(1843295-1843595)
chr1 (81-378)||(1868908-1869204)
chr1 (21-81)||(19326856-19326916)
chr1 (159-332)||(9229131-9229304)
chr1 (177-372)||(9118902-9119097)
chr1 (173-372)||(9161351-9161550)
chr1 (167-372)||(9199738-9199943)
chr1 (167-372)||(9170171-9170376)
chr1 (167-372)||(9218254-9218459)
chr1 (18-76)||(19330311-19330370)
chr1 (21-80)||(40524962-40525022)
[»] chr8 (5 HSPs)
chr8 (23-82)||(11686012-11686071)
chr8 (21-81)||(44206277-44206337)
chr8 (21-79)||(19177405-19177463)
chr8 (23-78)||(31343660-31343715)
chr8 (23-81)||(4863904-4863962)
[»] chr4 (1 HSPs)
chr4 (21-81)||(27442661-27442721)
[»] scaffold0655 (2 HSPs)
scaffold0655 (21-82)||(4205-4266)
scaffold0655 (21-81)||(6261-6321)
[»] chr2 (1 HSPs)
chr2 (21-82)||(39959414-39959475)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 1815373 - 1815738
Alignment:
Q  17 ataggatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcatcaccaagttcataaatgctagatgatgattcatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  1815373 ataggatacaacataattgcaggaaaatcattataactaatttcgacaaatattcttttctatcatcaccaaattcataaatgctagatgatgattcatg 1815472  T
Q  117 aagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcat 216  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1815473 aagcaagtagtggactctcctctacattaaggtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcat 1815572  T
Q  217 gcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacagccacctccatgatctcttgtttgttttcttcattccacaaaccatcttga 316  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1815573 gcttggtctttcctcccctataagtctcaaacagttcgccgcaagaacagccacctccatgatcacttgtttgttttcttcattccacaaaccatcttga 1815672  T
Q  317 ataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttctctct 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1815673 ataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttctctct 1815738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 81 - 378
Target Start/End: Complemental strand, 1857606 - 1857310
Alignment:
Q  81 atcaccaagttcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatccattaa 180  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||   |||  | || |||||||||||||||| ||||||    
T  1857606 atcaccaggttcataaatgctagatgatgattcatgaagcaagtacct-actctcctctacatttgagtcatctttgatccaagagtgcttattcattaa 1857508  T
Q  181 cctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacagccacctccatgatc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| || |||||||||||||||||||||||| |||||    
T  1857507 cctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatc 1857408  T
Q  281 tcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttct 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  1857407 tcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagacttcttct 1857310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 81 - 382
Target Start/End: Complemental strand, 1843595 - 1843295
Alignment:
Q  81 atcaccaagttcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatccattaa 180  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||   |||  | || |||||||||||||||| ||||||    
T  1843595 atcaccaggttcataaatgctagatgatgattcatgaagcaagtacct-actctcctctacatttgagtcatctttgatccaagagtgcttattcattaa 1843497  T
Q  181 cctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacagccacctccatgatc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| || |||||||||||||||||||||||| |||||    
T  1843496 cctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatc 1843397  T
Q  281 tcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttctct 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||  || | | | ||||||||||||||||    
T  1843396 tcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcttttttcaatcaagatagtaaattcattgcaagacttcttctct 1843297  T
Q  381 ct 382  Q
    ||    
T  1843296 ct 1843295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 81 - 378
Target Start/End: Complemental strand, 1869204 - 1868908
Alignment:
Q  81 atcaccaagttcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatccattaa 180  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| |  | |||||||||||||||   |||  |||| |||||||||||||||| ||||||    
T  1869204 atcaccaggttcataaaagctagatgatgattcatgaagcaagaaccg-actctcctctacatttgagtcatcattgatccaagagtgcttattcattaa 1869106  T
Q  181 cctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacagccacctccatgatc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| || |||||||||||||||||||||||| |||||    
T  1869105 cctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatc 1869006  T
Q  281 tcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttct 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||  || ||| | ||||||||||||||    
T  1869005 tcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcttttttcaatcaagatagtaaatgcattgcaagacttcttct 1868908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 19326916 - 19326856
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 81  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  19326916 gatacaacataattacaggaaaataattataactaattatgactaatattctattctatca 19326856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 332
Target Start/End: Original strand, 9229131 - 9229304
Alignment:
Q  159 tccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgc 258  Q
    |||||| |||||| ||||||||||| |  ||||| |  |||||||||||||| |||||||| ||||||||||| ||| |||||||||||||  | || ||    
T  9229131 tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttcctcgcctttaagtctcaagcaccttgcagc 9229230  T
Q  259 aagaacagccacctccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacat 332  Q
    ||||| ||| || ||| | ||||| |  ||||| || |||||| | | |||| |||||| ||||||| ||||||    
T  9229231 aagaatagcaacttccttaatctcctccttgttctcatcattcaaaataccaacttgaagaacttcagacacat 9229304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 372
Target Start/End: Complemental strand, 9119097 - 9118902
Alignment:
Q  177 ttaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacagccacctccat 276  Q
    ||||||| || || ||||| |||||||| | ||||||||| || |||||||||||||||  ||||||||| ||  | || ||||||| ||| |||||| |    
T  9119097 ttaaccttataccatccaactccatagctatttccttcatactaggtctttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctcctt 9118998  T
Q  277 gatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagact 372  Q
     |||||||  ||||| || |||||| | |  ||| |||||||| ||||||| |  ||||| | ||| || ||||| || |||||| ||||||||||    
T  9118997 aatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagact 9118902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 372
Target Start/End: Original strand, 9161351 - 9161550
Alignment:
Q  173 tccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacagccacct 272  Q
    ||||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| || ||| | |||||||| ||  | || ||||||| ||| ||||    
T  9161351 tccattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaacaccttgctgcaagaatagcaacct 9161450  T
Q  273 ccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagact 372  Q
    || | ||||| |  |||||||| |||||  | | |||| |||||||| ||||||| |   |||| | ||| || ||||| ||||||||| ||||||||||    
T  9161451 ccttaatctcctccttgttttcatcatttaaaataccaacttgaatagcttcaaaaattctatcttgttttaaacaagacaaaaagtgcatagcaagact 9161550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 372
Target Start/End: Original strand, 9199738 - 9199943
Alignment:
Q  167 tgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacag 266  Q
    ||||| ||||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||| ||||||| || ||  | || ||||||| ||    
T  9199738 tgcttctccattaaccttataccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatag 9199837  T
Q  267 ccacctccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagc 366  Q
    | |||||| | |||||||  |||||||| |||| | | |  ||| |||||||| | ||||| |  ||||| | ||| || ||||| ||||||||| ||||    
T  9199838 caacctccttaatctctttcttgttttcatcatccaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagc 9199937  T
Q  367 aagact 372  Q
    ||||||    
T  9199938 aagact 9199943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 372
Target Start/End: Original strand, 9170171 - 9170376
Alignment:
Q  167 tgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacag 266  Q
    ||||| ||||||||||| || || ||||| ||||| |||||||||||||| |  |||||||| || ||| ||||||| || ||  | |  ||||||| ||    
T  9170171 tgcttctccattaaccttatgccatccaactccattgccacttccttcatacaaggtctttcatcccctctaagtcttaaacaccttgaagcaagaatag 9170270  T
Q  267 ccacctccatgatctcttgtttgttttcttcattccacaaa-ccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtag 365  Q
    | |||||| | |||||||  ||||| || || || |||||| ||| |||||||| ||||||| |  ||||| | ||| || ||||| ||||||||| |||    
T  9170271 caacctccttaatctctttcttgttatcatcgtt-cacaaatccaacttgaatagcttcaaaaaatttatcttgttttaaacaagacaaaaagtgcatag 9170369  T
Q  366 caagact 372  Q
    |||||||    
T  9170370 caagact 9170376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 372
Target Start/End: Original strand, 9218254 - 9218459
Alignment:
Q  167 tgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacag 266  Q
    ||||| ||||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||| ||||||| || ||  | || ||||||| ||    
T  9218254 tgcttctccattaaccttatgccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatag 9218353  T
Q  267 ccacctccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagc 366  Q
      |||||| | |||||||  |||||||| |||||  | |  ||| |||||||| | ||||| |  ||||| | ||| || ||||| ||||||||| ||||    
T  9218354 aaacctccttaatctctttcttgttttcatcattgaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagc 9218453  T
Q  367 aagact 372  Q
    ||||||    
T  9218454 aagact 9218459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 19330370 - 19330311
Alignment:
Q  18 taggatacaacataattgcagg-aaaatcattataactaattatgacaaatattctattc 76  Q
    ||||||||||||||||| |||| ||||| |||||| ||||||||||| |||||| |||||    
T  19330370 taggatacaacataattacagggaaaataattatacctaattatgactaatattttattc 19330311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 40524962 - 40525022
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgac-aaatattctattctatc 80  Q
    ||||||||||||||  |||||||| ||||||   ||||||||| |||||||||||||||||    
T  40524962 gatacaacataattataggaaaataattatagtcaattatgacaaaatattctattctatc 40525022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 11686012 - 11686071
Alignment:
Q  23 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 82  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  11686012 tacaacataattacagggaaatcattaaaactaattatgacaaatattctattctatcat 11686071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 44206277 - 44206337
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 81  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||    
T  44206277 gatacaacataattacaggaaaataattataactaattatgactaatactctattctatca 44206337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 19177463 - 19177405
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctat 79  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||||||||    
T  19177463 gatacaacataattagaggaaaataattataactaattatgactaatattctattctat 19177405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 31343715 - 31343660
Alignment:
Q  23 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattcta 78  Q
    |||||||||||| | || ||||||||| |||||||||||||||||||| |||||||    
T  31343715 tacaacataattacggggaaatcattaaaactaattatgacaaatattatattcta 31343660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 4863904 - 4863962
Alignment:
Q  23 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 81  Q
    |||| ||||||| |||| ||||||||| |||||||||||  ||||||||||||||||||    
T  4863904 tacagcataattacagggaaatcattaaaactaattatggtaaatattctattctatca 4863962  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 27442661 - 27442721
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 81  Q
    |||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  27442661 gatacagcataattacaggaaaataattataactaattatgactaatattctattctatca 27442721  T

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Target: scaffold0655 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 4205 - 4266
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 82  Q
    |||||||||||||| |||| |||| |||||| | ||||||||||||||||||||||||||||    
T  4205 gatacaacataattacagggaaataattatagccaattatgacaaatattctattctatcat 4266  T

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Target: scaffold0655; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 6261 - 6321
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 81  Q
    |||||||||||||| |||| |||| |||||| | |||||| ||||||||||||||||||||    
T  6261 gatacaacataattacagggaaataattatagccaattattacaaatattctattctatca 6321  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 39959475 - 39959414
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 82  Q
    |||||| ||||||| ||| | ||||||||||| || | ||||||||||||||||||||||||    
T  39959475 gatacatcataattacagaataatcattataattagtcatgacaaatattctattctatcat 39959414  T

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