View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_22 (Length: 386)
Name: NF1894_low_22
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 51 - 373
Target Start/End: Original strand, 5309759 - 5310081
Alignment:
| Q |
51 |
gataaatcaagtaaaagctaagtatgtgattttggaatgctttgtaaaaatcctctcatgtgagagttatctatatcatgatgtaaatcaatcaagtagt |
150 |
Q |
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| T |
5309759 |
gataaatcaagtaaaagctaagtatgtgattttggaatgctttgtaaaaatcctctcatgtgagagttatctatatcatgatgtaaatcaataaagtagt |
5309858 |
T |
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| Q |
151 |
ctggagtaatcttgaattgatatatgctttcattgtatcatcctcttttagatagctatcatcctgtacatggttttgtttcagtcagatataaaatcaa |
250 |
Q |
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| T |
5309859 |
ctggagtaatcttgaattgatatatgctttcattgtatcatcctcttttagatagctatcatcctgtacatggttttgtttcagtcagatataaaatcaa |
5309958 |
T |
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| Q |
251 |
tcctctttatgtaaatcgcctagtagtgacagcaacttttatttgacaacaggttttggagagatattgaacattaaggaagtccttaaaggtttaaggc |
350 |
Q |
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| T |
5309959 |
tcctctttatgtaaatcgcctagtagtgacagcaacttttatttgacaacaggttttggagagatattgaacattaaggaagtccttaaaggtttaaggc |
5310058 |
T |
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| Q |
351 |
aagaacttaatggtttaacttga |
373 |
Q |
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| T |
5310059 |
aagaacttgatggtttaacttga |
5310081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 5307309 - 5307341
Alignment:
| Q |
19 |
ggttatacctcaatgtgacttgactcacgtagg |
51 |
Q |
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| T |
5307309 |
ggttatacctcaatgtgacttgactcacgtagg |
5307341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 15221650 - 15221529
Alignment:
| Q |
95 |
taaaaatcctctcatgtgaga-gttatctatatcatgatgtaaatcaatcaagtagtctggagtaatcttgaattgatatatgctttcattgtatcatcc |
193 |
Q |
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| T |
15221650 |
taaatatcctctcaagtgaaaagttatctagatcattatataaatcaatcatgtagtccaaagtactcttgaattggtataaaatttcattgtattatcc |
15221551 |
T |
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| Q |
194 |
tcttttagatagctatcatcct |
215 |
Q |
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| | |||| || ||||||||| |
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| T |
15221550 |
tataatagagagttatcatcct |
15221529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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