View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_23 (Length: 375)
Name: NF1894_low_23
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Complemental strand, 2429557 - 2429192
Alignment:
| Q |
10 |
gatgaactgggatattacaacctacacgggaagagnnnnnnnntttgaccatcatttaccttgctttgaaattgaaaaatagtttatttaaattttcagt |
109 |
Q |
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| T |
2429557 |
gatgaactgggatattacaacctacacgggaagagaaaaaaaatttgaccatcatttaccttgctttgaaattgaaaaatagtttatttaaattttcagt |
2429458 |
T |
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| Q |
110 |
catataaaaataccttattgttgacaaaattgaagagaagcccacgaactgctttccgcataccctgatgttgaatgttgaacagatcgaaaatttttgg |
209 |
Q |
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| T |
2429457 |
catataaaaataccttattgttgacaaaattgaagagaagcccacgaactgctttccgcataccctgatgttgaatgttgaacagatcgaaaatttttgg |
2429358 |
T |
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| Q |
210 |
taaacagtcctcatcaaccatggccacttggttatgaaaatcctacattaaatttaaaaataatatatcaaaagaataacaaagctgtagcaagcaattt |
309 |
Q |
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| T |
2429357 |
taaacagtcctcatcaaccatggccacttggttatgaaaatcctacattaaatttaaaaataatatatcaaaagaataacaaagctgtagcaagcaattt |
2429258 |
T |
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| Q |
310 |
atccaccaatttgatgaaactagcacggctacagtgcacaacaacaatccaattgaatggaacccc |
375 |
Q |
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| T |
2429257 |
atccaccaatttgatgaaactagcacggctacagtgcacaacaacaatccaattgaatggaacccc |
2429192 |
T |
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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 322718 - 322669
Alignment:
| Q |
287 |
aacaaagctgtagcaagcaatttatccaccaatttgatgaaactagcacg |
336 |
Q |
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| T |
322718 |
aacaaagctgcagcaagcaatttatccaccaatttgatgaaactagcacg |
322669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 18295034 - 18295096
Alignment:
| Q |
276 |
atcaaaagaataacaaagctgtagcaagcaatttatccaccaatttgatgaaactagcacggc |
338 |
Q |
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| T |
18295034 |
atcaaaagaataacaaagctgcagcaaccaattcatccaccaatttgaataaactagcacggc |
18295096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 1512315 - 1512344
Alignment:
| Q |
84 |
aaaaatagtttatttaaattttcagtcata |
113 |
Q |
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| T |
1512315 |
aaaaatagtttatttaaattttcagtcata |
1512344 |
T |
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