View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1894_low_24 (Length: 373)

Name: NF1894_low_24
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1894_low_24
NF1894_low_24
[»] chr6 (15 HSPs)
chr6 (129-358)||(13943119-13943348)
chr6 (128-358)||(14027216-14027446)
chr6 (161-359)||(14017227-14017425)
chr6 (125-359)||(14112623-14112857)
chr6 (111-359)||(13470601-13470849)
chr6 (130-358)||(13860714-13860942)
chr6 (92-358)||(13890666-13890932)
chr6 (137-339)||(14086759-14086964)
chr6 (125-340)||(13872831-13873046)
chr6 (125-268)||(14049096-14049239)
chr6 (8-82)||(14049264-14049338)
chr6 (9-82)||(14027477-14027550)
chr6 (8-78)||(13872744-13872814)
chr6 (9-79)||(14017439-14017509)
chr6 (8-86)||(14087015-14087093)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 129 - 358
Target Start/End: Complemental strand, 13943348 - 13943119
Alignment:
Q  129 atatcagcggtgatatccacaagtcactgatggagttgcaacaattacaatatttgaacctcagtagaaataattttcaaggcaattctataccaggttt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  13943348 atatcagcggtgatatccacaagtcactgatggagttgcaacagttacaatatttgaacttcagtagaaataattttgaaggcaattctataccaggttt 13943249  T
Q  229 ctttggatctttaagaaacctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatac 328  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13943248 ctttggatctttaagaaacctaagataccttgatctttcatattgttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatac 13943149  T
Q  329 ttgaatctttccaacaatcatctagatggt 358  Q
    |||||||||||| |||||| ||||||||||    
T  13943148 ttgaatctttcctacaatcttctagatggt 13943119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 128 - 358
Target Start/End: Complemental strand, 14027446 - 14027216
Alignment:
Q  128 tatatcagcggtgatatccacaagtcactgatggagttgcaacaattacaatatttgaacctcagtagaaataattttcaaggcaattctataccaggtt 227  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  14027446 tatatcagtggtgatatccacaagtcattgatggagttgcaacaattacaatatttgaacctcagtagaaataattttgaaggcaattctatactaggtt 14027347  T
Q  228 tctttggatctttaagaaacctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaata 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14027346 tctttggatctttaagaaacctaagataccttgatctttcatattgtcattttggaggacaaattcctattcaattggagtctctttcacatttgaaata 14027247  T
Q  328 cttgaatctttccaacaatcatctagatggt 358  Q
    |||||||||||||||||||| ||||||||||    
T  14027246 cttgaatctttccaacaatcttctagatggt 14027216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 161 - 359
Target Start/End: Complemental strand, 14017425 - 14017227
Alignment:
Q  161 gagttgcaacaattacaatatttgaacctcagtagaaataattttcaaggcaattctataccaggtttctttggatctttaagaaacctaagataccttg 260  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14017425 gagttgcaacaattacaatatttgaacttcagtagaattaattttgaaggcaattctataccaggtttctttggatctttaagaaacctaagataccttg 14017326  T
Q  261 atctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttccaacaatcatctagatggtg 359  Q
    ||||||||  ||   || || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14017325 atctttcaatttgcaatcttggaggacaaattcctattcaattggagtctctttcacatttgaaatacttggatctttccaacaatcatctagatggtg 14017227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 125 - 359
Target Start/End: Complemental strand, 14112857 - 14112623
Alignment:
Q  125 ttttatatcagcggtgatatccacaagtcactgatggagttgcaacaattacaatatttgaacctcagtagaaataattttcaaggcaattctataccag 224  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||| | ||||||||||||||| ||||||||||| |||||||   ||| |||     
T  14112857 ttttatatcagtggtgatatccacaagtcactgatagagttgcagcaattaaagtatttgaacctcagtggaaataattttgaaggcaaagatatcccaa 14112758  T
Q  225 gtttctttggatctttaagaaacctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaa 324  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||| ||||||| | |||| ||||||||||| ||||| ||||||||||||||||||    
T  14112757 gtttctttggatctctaagaaacctaagaaaccttgatctttcaaattgttattttggcggacgaattcctattccattggggtctctttcacatttgaa 14112658  T
Q  325 atacttgaatctttccaacaatcatctagatggtg 359  Q
    |||| | |||||||||||||||| |||||||||||    
T  14112657 atacataaatctttccaacaatcgtctagatggtg 14112623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 111 - 359
Target Start/End: Original strand, 13470601 - 13470849
Alignment:
Q  111 atgatggaaacaagttttatatcagcggtgatatccacaagtcactgatggagttgcaacaattacaatatttgaacctcagtagaaataattttcaagg 210  Q
    ||||||| || || |||||||| || |||||||||||||||||| ||||||||||||| |||||| | |||||||||||  || ||||||||||| ||||    
T  13470601 atgatggcaataaattttatatgagtggtgatatccacaagtcattgatggagttgcagcaattaaagtatttgaaccttggtggaaataattttgaagg 13470700  T
Q  211 caattctataccaggtttctttggatctttaagaaacctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtct 310  Q
    ||||| ||| | | || ||||||||||| |||||||||||||||||||||||||||||  ||   || || |||||||||||||||||||||| ||||||    
T  13470701 caattatatcctaagtatctttggatctctaagaaacctaagataccttgatctttcaggttgcaatcttggaggacaaattcctattcaattcgagtct 13470800  T
Q  311 ctttcacatttgaaatacttgaatctttccaacaatcatctagatggtg 359  Q
    ||||| ||||||||||||||||||||||| ||||| | |||||||||||    
T  13470801 ctttctcatttgaaatacttgaatctttcaaacaaccgtctagatggtg 13470849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 130 - 358
Target Start/End: Original strand, 13860714 - 13860942
Alignment:
Q  130 tatcagcggtgatatccacaagtcactgatggagttgcaacaattacaatatttgaacctcagtagaaataattttcaaggcaattctataccaggtttc 229  Q
    |||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||||  |   | |  | |||||||||||    
T  13860714 tatcaggggtgatatccacaagtcattggtggagttgcaacaattacaatatttgaacctcagcggaaataattttagaaagagtattctaccaggtttc 13860813  T
Q  230 tttggatctttaagaaacctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatact 329  Q
    ||||||||||||||||||||||||||||||||||||||  ||| | ||||| |||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  13860814 tttggatctttaagaaacctaagataccttgatctttctaattgtcattttggaggacaaattcatattcaatttgagtctctttcgcatttgaaatact 13860913  T
Q  330 tgaatctttccaacaatcatctagatggt 358  Q
    ||||||||||    |||||||||||||||    
T  13860914 tgaatctttcgtggaatcatctagatggt 13860942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 92 - 358
Target Start/End: Original strand, 13890666 - 13890932
Alignment:
Q  92 tataattatcttaatggttatgatggaaacaagttttatatcagcggtgatatccacaagtcactgatggagttgcaacaattacaatatttgaacctca 191  Q
    |||||||||  ||||| | ||||||| || || ||||||||||  |||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  13890666 tataattattataatgataatgatggcaataaattttatatcatgggtgatatccacaagtcattgatggagttgcaacagttacaatatttgaacctca 13890765  T
Q  192 gtagaaataattttcaaggcaattctataccaggtttctttggatctttaagaaacctaagataccttgatctttcatattcttattttcgaggacaaat 291  Q
      ||||||||||||  ||| | |  | | ||||||||||||||||||||||||||||||||||||||||||||||| ||||    |||| ||||||||||    
T  13890766 acagaaataattttagagggagtcatgtcccaggtttctttggatctttaagaaacctaagataccttgatctttcttattgcggttttggaggacaaat 13890865  T
Q  292 tcctattcaattggagtctctttcacatttgaaatacttgaatctttccaacaatcatctagatggt 358  Q
    |||||||||||| ||||| ||||  |||||||||||||||||  |||||  |||| |||| ||||||    
T  13890866 tcctattcaatttgagtcactttaccatttgaaatacttgaaaatttccggcaatgatctggatggt 13890932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 137 - 339
Target Start/End: Complemental strand, 14086964 - 14086759
Alignment:
Q  137 ggtgatatccacaagtcactgatggagttgcaacaattacaatatttgaacctcagtagaaataattttcaaggcaattctataccaggtttctttggat 236  Q
    |||||||||||||| |||||||||||||||||| ||||| | || |||||||| ||||||||| ||||||||||||||  ||| ||| ||||||||||||    
T  14086964 ggtgatatccacaactcactgatggagttgcaaaaattaaagtacttgaacctaagtagaaatgattttcaaggcaatcatatcccaagtttctttggat 14086865  T
Q  237 ctttaagaaacctaagataccttgatctttcatattcttattttcgagga---caaattcctattcaattggagtctctttcacatttgaaatacttgaa 333  Q
    || | |||||||||||||||||||||||||||||||   |||||  ||||   ||||||||||||||||||||||||||||  |||||||||||||||||    
T  14086864 ctctgagaaacctaagataccttgatctttcatattgcaattttgaaggagatcaaattcctattcaattggagtctcttttgcatttgaaatacttgaa 14086765  T
Q  334 tctttc 339  Q
    ||||||    
T  14086764 tctttc 14086759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 340
Target Start/End: Original strand, 13872831 - 13873046
Alignment:
Q  125 ttttatatcagcggtgatatccacaagtcactgatggagttgcaacaattacaatatttgaacctcagtagaaataattttcaaggcaattctataccag 224  Q
    ||||||||| | |||||| || |||||||| ||||||||||| | |||||| | ||||||||| ||||| | ||| ||||| |||||| |  ||    ||    
T  13872831 ttttatatcggaggtgatgtcgacaagtcagtgatggagttgaagcaattaaagtatttgaacttcagtgggaattattttaaaggcagtaatagtttag 13872930  T
Q  225 gtttctttggatctttaagaaacctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaa 324  Q
    |||| ||||| ||| |||||||| ||||||||||||| ||||||  || |   ||| | ||| ||||| | |||||||| ||||||||| | ||||||||    
T  13872931 gtttttttggttctctaagaaacataagataccttgacctttcacgttgtcgctttggtggaaaaatttcaattcaatttgagtctcttccgcatttgaa 13873030  T
Q  325 atacttgaatctttcc 340  Q
    ||| |||| |||||||    
T  13873031 atatttgagtctttcc 13873046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 125 - 268
Target Start/End: Complemental strand, 14049239 - 14049096
Alignment:
Q  125 ttttatatcagcggtgatatccacaagtcactgatggagttgcaacaattacaatatttgaacctcagtagaaataattttcaaggcaattctataccag 224  Q
    ||||||||| | |||||||||||||| ||| ||||||||||||| ||| || | |||||||||||| || | ||| ||||   ||  | |||||| ||||    
T  14049239 ttttatatccgtggtgatatccacaactcattgatggagttgcagcaactaaagtatttgaacctccgtgggaattatttcacagatatttctatcccag 14049140  T
Q  225 gtttctttggatctttaagaaacctaagataccttgatctttca 268  Q
    ||||| |||||||| |||||||| |||| || | ||||||||||    
T  14049139 gtttcattggatctctaagaaacttaaggtatcatgatctttca 14049096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 14049338 - 14049264
Alignment:
Q  8 caatggcatggaattgattgccacaacatcactggccctgtgcttatgctcgaccttcatggtgatcataattat 82  Q
    |||||| ||||||||| ||||  ||| |||||||||| ||| ||||||||||| |||||||||||| ||||||||    
T  14049338 caatggtatggaattggttgcagcaatatcactggccatgtacttatgctcgatcttcatggtgattataattat 14049264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 14027550 - 14027477
Alignment:
Q  9 aatggcatggaattgattgccacaacatcactggccctgtgcttatgctcgaccttcatggtgatcataattat 82  Q
    ||||| ||||||||| ||||  ||| |||||||||| ||| |||||||||||||||||||||||| || |||||    
T  14027550 aatggtatggaattggttgcagcaatatcactggccatgtacttatgctcgaccttcatggtgattattattat 14027477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 13872744 - 13872814
Alignment:
Q  8 caatggcatggaattgattgccacaacatcactggccctgtgcttatgctcgaccttcatggtgatcataa 78  Q
    |||||| ||||||||  ||||  |||| ||||||||| ||| ||||||||||| |||||||||||| ||||    
T  13872744 caatggtatggaattcgttgcagcaacctcactggccatgtacttatgctcgatcttcatggtgattataa 13872814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 14017509 - 14017439
Alignment:
Q  9 aatggcatggaattgattgccacaacatcactggccctgtgcttatgctcgaccttcatggtgatcataat 79  Q
    ||||| ||||||||| ||||  |||| ||||||| | ||| ||||||||| |||||||||||||| |||||    
T  14017509 aatggtatggaattggttgcagcaacctcactggtcatgtacttatgctcaaccttcatggtgattataat 14017439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 14087093 - 14087015
Alignment:
Q  8 caatggcatggaattgattgccacaacatcactggccctgtgcttatgctcgaccttcatggtgatcataattataatt 86  Q
    |||||| | ||||||| |||| ||||| ||||||||| ||| ||||||||| ||||||||||| || || ||||| |||    
T  14087093 caatggaagggaattggttgcaacaacctcactggccatgtacttatgctcaaccttcatggtaattatgattatgatt 14087015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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