View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_25 (Length: 371)
Name: NF1894_low_25
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 11027781 - 11028094
Alignment:
| Q |
14 |
attacaatatttgacttagagatttgtaacacttcaatctgttggtgtttgccttacatattctcttgcaattgatacagtttgttccactgttgaatgg |
113 |
Q |
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| T |
11027781 |
attacaatatttgacttagagatttgtaacacttcaatctgttggtgtttgccttacatattctcttgcaattgatacagtttgttccactgttgaatgg |
11027880 |
T |
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| Q |
114 |
tggaggatttactcttgcgagaaactcgacagatctgtttcaaagttttgggtttcattcacagccagtcatcattggactcatcatatatctggtactt |
213 |
Q |
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| T |
11027881 |
tggaggatttactcttgcgagaaactcgacagatctgtttcaaagttttgggtttcattcacagccagtcatcattggactcatcatatatctggtactt |
11027980 |
T |
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| Q |
214 |
tctaaaattataactggcatggatggcagtaaaacaagttatttccattgaacccaaaaaataaaataagaaccactttatttaatctaacaattaatta |
313 |
Q |
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| T |
11027981 |
tctaaaattataactggcatggatggcagtaaaacaagttatttccattgaacccaaaaaataaaataagaaccactttatttaatctaacaattaacta |
11028080 |
T |
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| Q |
314 |
ttaacatttgcatt |
327 |
Q |
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| T |
11028081 |
ttaacatttgcatt |
11028094 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 29809265 - 29809186
Alignment:
| Q |
145 |
gatctgtttcaaagttttgggtttcattcacagccagtcatcattggactcatcatatatctggtactttctaaaattat |
224 |
Q |
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| T |
29809265 |
gatctgttccaaagttttgggtttgatacacagccagtcctcattggactcatcctatttcaggtgcttttaaaaattat |
29809186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 24835397 - 24835450
Alignment:
| Q |
145 |
gatctgtttcaaagttttgggtttcattcacagccagtcatcattggactcatc |
198 |
Q |
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| T |
24835397 |
gatctgttccaatgttttgggtttgatacacagccagtcctcattggactcatc |
24835450 |
T |
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