View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_26 (Length: 358)
Name: NF1894_low_26
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 126 - 343
Target Start/End: Complemental strand, 24200046 - 24199816
Alignment:
| Q |
126 |
taagtggcattcgagaggaaatttcaattcacactgcttctactgtttattcacttttctttatcaattctttgcnnnnnnnngttcaatcgttgtttgc |
225 |
Q |
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| T |
24200046 |
taagtggcattcgagaggaaattgcaattcacactacttctactgtttattcacttttctttatcaattctttgcttttttttgttcaatcgttgtttgc |
24199947 |
T |
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| Q |
226 |
taatagtttatgcaaattagaaatatcttgattt-----------tcaatggttctttcnnnnnnnnnnnn--tgatattcaatggtttatgcaatgttc |
312 |
Q |
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| T |
24199946 |
taatagtttatgcaaattagaaatatcttgattttcaaatgatattcaatggttctctcaaaaacaaaaaaaatgatattcaatggtttatgcaatgttc |
24199847 |
T |
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| Q |
313 |
ttcaaaaacctcgatctttaataataatcat |
343 |
Q |
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| T |
24199846 |
ttcaaaaacctcgatctttaataataatcat |
24199816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 55 - 263
Target Start/End: Complemental strand, 47698861 - 47698653
Alignment:
| Q |
55 |
taaagacaccgttattaatgcatctgatatgannnnnnnnnactaagctatcctatggaaatatctatatataagtggcattcgagaggaaatttcaatt |
154 |
Q |
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| T |
47698861 |
taaagacgccgttattaatgcgcctgatatgatttttttttactaagttaccctatggaaatatctatatataagtggcattcgagagaaaattgcaaat |
47698762 |
T |
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| Q |
155 |
cacactgcttctactgtttattcacttttctttatcaattctttgcnnnnnnnngttcaatcgttgtttgctaatagtttatgcaaattagaaatatctt |
254 |
Q |
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| T |
47698761 |
catactgcttctactgtttattcacttttctttatcaattctttgtttttttttgttcaatcgttgtttgctaatagtttatgcaaatgagacatatctt |
47698662 |
T |
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| Q |
255 |
gattttcaa |
263 |
Q |
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|||||||| |
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| T |
47698661 |
aattttcaa |
47698653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 47698620 - 47698575
Alignment:
| Q |
286 |
tgatattcaatggtttatgcaatgttcttcaaaaacctcgatcttt |
331 |
Q |
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| T |
47698620 |
tgatattcaatggtttatgcaatgtttttcaaaaacctcgatcttt |
47698575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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