View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_27 (Length: 350)
Name: NF1894_low_27
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 22 - 340
Target Start/End: Complemental strand, 3015262 - 3014934
Alignment:
| Q |
22 |
tactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaatgcaggcctcatcagcagaatctttcttgttctcatcctta |
121 |
Q |
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| T |
3015262 |
tactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaacgcaggcctcatcagcagaatctttcttgttctcatcctta |
3015163 |
T |
|
| Q |
122 |
ttgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtg |
221 |
Q |
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||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3015162 |
ttgttgttcatgtgagtaatgttgtccttgtacctattaaattgatcaaatagatgatgcattttatcggagataaatattttgacacccaatttatgtg |
3015063 |
T |
|
| Q |
222 |
caagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgcac----------tggccttct |
311 |
Q |
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| T |
3015062 |
caagttgccaagcttcaggggtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgcactggcttgcactggccttct |
3014963 |
T |
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| Q |
312 |
ccacatccttcttatgtataggacctatg |
340 |
Q |
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| T |
3014962 |
ccacatccttcttatgtataggacctatg |
3014934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 40671550 - 40671853
Alignment:
| Q |
19 |
atctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaatgcaggcctcatcagcagaatctttcttgttctcatcc |
118 |
Q |
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| T |
40671550 |
atctactcccaaaacaatgggatccttatggttgaagacaaaatttggcttgatcttgagaacgcaggcctcatcagcagaatctttcttttgcgcctcc |
40671649 |
T |
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| Q |
119 |
ttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttat |
218 |
Q |
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||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
40671650 |
tta------------------atgttgttcatgtaagtcttaaatcgatcaaatagatgatgcattttatcggagatgaaaattttgacacccaatttgt |
40671731 |
T |
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| Q |
219 |
gtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatc |
318 |
Q |
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| T |
40671732 |
gtgcaagttgccaagctccaggggtgaccatggcaggaaacgccaacacaacagcatactctggtttcttttcaagcattgcactggccttctccacatc |
40671831 |
T |
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| Q |
319 |
cttcttatgtataggacctatg |
340 |
Q |
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||||||||| | |||||||||| |
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| T |
40671832 |
cttcttatgaacaggacctatg |
40671853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 340
Target Start/End: Complemental strand, 44607708 - 44607525
Alignment:
| Q |
157 |
cttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcagga |
256 |
Q |
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||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||| |||||||| | |||||||| |||||| || || | |
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| T |
44607708 |
cttaaattgatcaaatagatgataaataatatcggcaataaaaattttcacacccaatttatctgcaagttccttagcttcagaggtgactttgacatca |
44607609 |
T |
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| Q |
257 |
aacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgtataggacctatg |
340 |
Q |
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||||||||||||| || ||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||| |
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| T |
44607608 |
aacgccaatatagtagaatattctcgtttcttttcaagcattacactggccttcatcacatccttcttatgtacagggcctatg |
44607525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 44629214 - 44629042
Alignment:
| Q |
157 |
cttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcagga |
256 |
Q |
| |
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||||||||||||||||||||||| || |||||| |||||||| || |||||||||| | |||||| | || ||||||||| |||||| || || | |
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| T |
44629214 |
cttaaattgatcaaatagatgataaatgatatcggctataaaaatcttcacacccaattcctctgcaagatccctagcttcaggggtgactttgacatca |
44629115 |
T |
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| Q |
257 |
aacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgta |
329 |
Q |
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|| |||||||||| |||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
44629114 |
aatgccaatatagtagcatattctcgtttcttttcaagcatcacactggccttcatcacatccttcttatgta |
44629042 |
T |
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