View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1894_low_28 (Length: 347)
Name: NF1894_low_28
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 50914088 - 50913749
Alignment:
| Q |
1 |
taggaactttcaaatttgcaattgagatgagattatttggttattgaaattaatgttttacttctattctatttgtagattatggctggtcgtagagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50914088 |
taggaactttcaaatttgcaattgagatgagattatttggttattgaaattaatgttttacttctattctatttgtagattatggctggtcgtagagaac |
50913989 |
T |
|
| Q |
101 |
tggcaatggtagactcctcataattatgtgctttctataataac------gataagttcatgtcaagatcatagaaaggtttgtatggccttctaatata |
194 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50913988 |
tggcaatggtagactcctcataattgtgtgctttctataataactttaacgataagttcatgtcaagatcatagaaaggtttgtatggcctcctaatata |
50913889 |
T |
|
| Q |
195 |
tgcaaaagaattaccagtcttggtgcatgcaatgcaactatttgagatgacacaaaaaataacacataaaaatatagtttcttaaggttatcatttaaga |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50913888 |
tgcaaaagaattaccagtcttggtgcatgcaatgcaactatttgagatgacacaaaaaataacacataaaaatatagtttcttaaggttatcatttaaga |
50913789 |
T |
|
| Q |
295 |
tttccacttaagaggaagcatcaaaattgacaaagaaatt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50913788 |
tttccacttaagaggaagcatcaaaattgacaaagaaatt |
50913749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 38038945 - 38038812
Alignment:
| Q |
217 |
gtgcatgcaatgcaactatttgagatgacacaaaaaataacacataaa--------aatatagtttcttaaggttatcatttaagatttccacttaagag |
308 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||| |||||| ||||||||| |
|
|
| T |
38038945 |
gtgcatgcaatgcaattatttgagatgacacaaaaaacaacacataaattcacaagaatatagtttcataaggttctcatttatgatttcaacttaagag |
38038846 |
T |
|
| Q |
309 |
gaagcatcaaaattgacaaagaaattgatgatgt |
342 |
Q |
| |
|
||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
38038845 |
gaaacatcaaaattgacaaagaagttgctgatgt |
38038812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 342
Target Start/End: Complemental strand, 38027911 - 38027720
Alignment:
| Q |
169 |
aaaggtttgtatggccttctaatatatgcaaaagaattaccagtcttgg----------tgcatgcaatgcaactatttgagatgacacaaaaaataaca |
258 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| || ||||| ||||||||||||||| |||| |
|
|
| T |
38027911 |
aaaggtttgtatggcccagtaatatatgcaaaagaattatcagtcttggcttgtgtttgtgcatgcaatgtaattattttagatgacacaaaaaacaaca |
38027812 |
T |
|
| Q |
259 |
cataaa--------aatatagtttcttaaggttatcatttaagatttccacttaagaggaagcatcaaaattgacaaagaaattgatgatgt |
342 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||| ||||||| ||||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
38027811 |
cataaattgacaagaatatagtttcttaaggttctcatctaagttttccacataagaggaaacatcaaaattgataaagaaattgctgatgt |
38027720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 38035460 - 38035326
Alignment:
| Q |
217 |
gtgcatgcaatgcaactatttgagatgacac-aaaaaataacacataaa--------aatatagtttcttaaggttatcatttaagatttccacttaaga |
307 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||| |||||||||| |||||| |||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
38035460 |
gtgcatgcaatgcaattatttgaaatgacactaaaaaagaacacataaattcagaagaatataatttcttaaagttctcatttaagatttccacttaaga |
38035361 |
T |
|
| Q |
308 |
ggaagcatcaaaattgacaaagaaattgatgatgt |
342 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||| |
|
|
| T |
38035360 |
ggaaacatcaaaattgacaaaaaaattgctgatgt |
38035326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 38032624 - 38032555
Alignment:
| Q |
265 |
aatatagtttcttaaggttatcatttaagatttccacttaagaggaagcatcaaaattgacaaagaaatt |
334 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
38032624 |
aatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaagaaatt |
38032555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 55082565 - 55082620
Alignment:
| Q |
279 |
aggttatcatttaagatttccacttaagaggaagcatcaaaattgacaaagaaatt |
334 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
55082565 |
aggttctcatttcagatttccacttaagaggaaagatcaaaatggacaaagaaatt |
55082620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 38035525 - 38035479
Alignment:
| Q |
169 |
aaaggtttgtatggccttctaatatatgcaaaagaattaccagtctt |
215 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
38035525 |
aaagggttgtatggcctcgtaatatatgcaaaagaattactagtctt |
38035479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 50906624 - 50906680
Alignment:
| Q |
265 |
aatatagtttcttaaggttatcatttaagatttccacttaagaggaagcatcaaaat |
321 |
Q |
| |
|
|||||||||| |||| || |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
50906624 |
aatatagttttgtaagattctcatttctgatttccacttaagaggaaacatcaaaat |
50906680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 21608655 - 21608530
Alignment:
| Q |
217 |
gtgcatgcaatgcaactatttgagatgacacaaaaaataacacataaa--------aatatagtttcttaaggttatcatttaagatttccacttaagag |
308 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||| |||||| || |||||| |
|
|
| T |
21608655 |
gtgcatgcaatgcaattatttgagatgacacaaaaaacaacacataaattcacaagaatatagtttcataaggttctcatttatgatttcaacataagag |
21608556 |
T |
|
| Q |
309 |
gaagcatcaaaattgacaaagaaatt |
334 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
21608555 |
gaaacatcaaaattgacaaagaaatt |
21608530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University