View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_3 (Length: 699)
Name: NF1894_low_3
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 341 - 679
Target Start/End: Original strand, 3911343 - 3911681
Alignment:
| Q |
341 |
tgtttctgcagagtttgcaggtttttagcagaaatggtggcagatggttttttaactttacatgtgaaattattttttgctctcatttttctttggtgct |
440 |
Q |
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| T |
3911343 |
tgtttctgcagagtttgcaggtttttagcagaaatggtggcagatggttttttaactttacatgtgaaattattttttgctctcatttttctttggtgct |
3911442 |
T |
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| Q |
441 |
agctagtagctatgttatgtttgtatggcagaaacaatgatgtgattgaacatctaaagcttattattattattactcattcataataatttcagaagct |
540 |
Q |
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| T |
3911443 |
agctagtagctatgttatgtttgtatggcagaaacaatgatgtgattgaacatctaaagcttattattattattactcattcataataatttcagaagct |
3911542 |
T |
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| Q |
541 |
ttgaaaatccaactctttcttcatttcacataaaaagctatattatttggagaatacacagaagaatactctttaactcacttcaccttaccctttcaat |
640 |
Q |
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| T |
3911543 |
ttgaaaatccaactctttcttcatttcacataaaaagctatattatttggagaatacacagaagaatactctttaactcacttcaccttaccctttcaat |
3911642 |
T |
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| Q |
641 |
ggttcctactgagtgctacagttgaagaaggagtctagt |
679 |
Q |
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| T |
3911643 |
ggttcctagtgagtactacagttgaagaaggagtctagt |
3911681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 3911018 - 3911271
Alignment:
| Q |
16 |
ataacgatgtaatagcataaatagtgtaactagttagtgtgtataagatgagtgtctttactagtgtatgacccatttccccacaaactcacacagataa |
115 |
Q |
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| T |
3911018 |
ataacgatgtaatagcataaatagtgtaactagttagtgtgtataagatgagtgtctttactagtgtatgacccatttccccacaaactcacacagataa |
3911117 |
T |
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| Q |
116 |
tggcatagcaaaactgcaaagaaagtgacatctgagaatcaaaagttaaatccaacgacacaccacaccttactgttcactgtgttatttacttctacca |
215 |
Q |
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| T |
3911118 |
tggcatagcaaaactgcaaagaaagtgacatctgagaatcaaaagttaaatccaacgacacaccacaccttactgttcactgtgttatttacttctacca |
3911217 |
T |
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| Q |
216 |
tgtctcaactcaaccacattgtcatagatagcacttgcatatacataacagttt |
269 |
Q |
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| T |
3911218 |
tgtctcaactcaaccacattgtcatagatagcacttgcatatacataacagttt |
3911271 |
T |
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