View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_36 (Length: 317)
Name: NF1894_low_36
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_36 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 36734398 - 36734091
Alignment:
| Q |
10 |
caagaatatccaataaaatatcaagtagatccttaatttgaccttctcctccaccaacttcctttctcctcctccttacttcttgatgctccttgataat |
109 |
Q |
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| T |
36734398 |
caagaatatccaataaaatatcaagtagatccttaatttgaccttctcctccaccaacttcttttctcctcctccttacttcttgatgctccttgataat |
36734299 |
T |
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| Q |
110 |
cctctccatcatagaatcaaacctgtccctaatttcctttaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaata |
209 |
Q |
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| T |
36734298 |
cctctccatcatagaatcaaacctgtccctaatttcctctaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaata |
36734199 |
T |
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| Q |
210 |
ttaaacttccccgtaagatgtacagtgtcttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatcctcg |
309 |
Q |
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| T |
36734198 |
ttaaacttccccgtaagatgtacagtgtcttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatccttg |
36734099 |
T |
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| Q |
310 |
aaataacg |
317 |
Q |
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| T |
36734098 |
aaataacg |
36734091 |
T |
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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 19053 - 18973
Alignment:
| Q |
173 |
atcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgtcttgcaccaacttcct |
253 |
Q |
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| T |
19053 |
atcccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcct |
18973 |
T |
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