View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1894_low_40 (Length: 294)

Name: NF1894_low_40
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1894_low_40
NF1894_low_40
[»] chr8 (2 HSPs)
chr8 (141-288)||(9744187-9744334)
chr8 (4-73)||(9744051-9744119)
[»] chr5 (2 HSPs)
chr5 (141-287)||(16420625-16420771)
chr5 (8-73)||(16420841-16420906)
[»] chr7 (4 HSPs)
chr7 (141-287)||(24538807-24538953)
chr7 (144-284)||(28082126-28082265)
chr7 (8-73)||(24538672-24538734)
chr7 (20-69)||(28082343-28082392)
[»] chr2 (3 HSPs)
chr2 (144-287)||(16060373-16060517)
chr2 (209-287)||(4777156-4777231)
chr2 (5-72)||(16060592-16060659)
[»] chr1 (1 HSPs)
chr1 (144-287)||(41708236-41708376)
[»] chr6 (1 HSPs)
chr6 (144-287)||(8231465-8231608)
[»] chr4 (2 HSPs)
chr4 (4-53)||(47327174-47327223)
chr4 (4-53)||(47341970-47342019)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 141 - 288
Target Start/End: Original strand, 9744187 - 9744334
Alignment:
Q  141 gagcgaactaaaagcaagagggattgcaatcccttaaaaactagcgagtcggtcggttggaagaaccaaccttgaaccctttgctagcctcagtcaccga 240  Q
    |||||||||||||||||||||||  ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||     
T  9744187 gagcgaactaaaagcaagagggaccgcaatcccttaaaaactagtgaggcgatcggttggaagaaccaaccttgaaccctttgctagcctcagtcaccgg 9744286  T
Q  241 ctttgacttcttcttttttcttgggaccaccaactgaaattgatgatg 288  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9744287 ctttgacttcttcttttttcttggaaccaccaactggaattgatgatg 9744334  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 9744051 - 9744119
Alignment:
Q  4 aaaaattatggggagcagaggagtctcctactgctccaccctaattatattaagagaaagataaaagtac 73  Q
    |||||| |||||| ||||||| ||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  9744051 aaaaatcatggggggcagaggggtctccg-ctgctccaccctaattatattaaaagaaagataaaagtac 9744119  T

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Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 141 - 287
Target Start/End: Complemental strand, 16420771 - 16420625
Alignment:
Q  141 gagcgaactaaaagcaagagggattgcaatcccttaaaaactagcgagtcggtcggttggaagaaccaaccttgaaccctttgctagcctcagtcaccga 240  Q
    |||||||||||||||||||||||   | |||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||| ||     
T  16420771 gagcgaactaaaagcaagagggaccactatcccttaaaaactagcgaggcgctcagttggaagaaccaacctcgaaccctttgctagcctcagtcatcgg 16420672  T
Q  241 ctttgacttcttcttttttcttgggaccaccaactgaaattgatgat 287  Q
    ||||||||| ||||| |||||||| |||||||| |||||||||||||    
T  16420671 ctttgactttttcttatttcttggaaccaccaattgaaattgatgat 16420625  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 16420906 - 16420841
Alignment:
Q  8 attatggggagcagaggagtctcctactgctccaccctaattatattaagagaaagataaaagtac 73  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  16420906 attatggggagcagaggggtctcctactgcttcaccctaattatattaaaagaaagataaaagtac 16420841  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 141 - 287
Target Start/End: Original strand, 24538807 - 24538953
Alignment:
Q  141 gagcgaactaaaagcaagagggattgcaatcccttaaaaactagcgagtcggtcggttggaagaaccaaccttgaaccctttgctagcctcagtcaccga 240  Q
    ||||||||||||||||||| |||   | ||| ||||||||||| |||| || |||||||||||||||||||||||||||||||||||| | |||||||||    
T  24538807 gagcgaactaaaagcaagatggaccactatctcttaaaaactaacgaggcgttcggttggaagaaccaaccttgaaccctttgctagcattagtcaccga 24538906  T
Q  241 ctttgacttcttcttttttcttgggaccaccaactgaaattgatgat 287  Q
    ||| || || |||| ||||||||  |||||||| |||||||||||||    
T  24538907 cttagaatttttctattttcttgaaaccaccaattgaaattgatgat 24538953  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 28082265 - 28082126
Alignment:
Q  144 cgaactaaaagcaagagggattgcaatcccttaaaaactagcgagtcggtcggttggaagaaccaaccttgaaccctttgctagcctcagtcaccgactt 243  Q
    ||||||||||||||||||||  || ||||| |||||||||||||| || || ||| |||||| ||||| |||| ||||||||||||||| ||| |   ||    
T  28082265 cgaactaaaagcaagagggaccgctatcccctaaaaactagcgaggcgatcagtttgaagaagcaaccctgaa-cctttgctagcctcaatcatctgttt 28082167  T
Q  244 tgacttcttcttttttcttgggaccaccaactgaaattgat 284  Q
    ||||||||||| ||||||||| | ||||||| |||||||||    
T  28082166 tgacttcttctcttttcttggaaacaccaaccgaaattgat 28082126  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 24538672 - 24538734
Alignment:
Q  8 attatggggagcagaggagtctcctactgctccaccctaattatattaagagaaagataaaagtac 73  Q
    ||||||||||||||||| || |||| ||||| ||||||||||||  ||| ||||||||||||||||    
T  24538672 attatggggagcagagg-gtttcctgctgcttcaccctaattat--taaaagaaagataaaagtac 24538734  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 28082392 - 28082343
Alignment:
Q  20 agaggagtctcctactgctccaccctaattatattaagagaaagataaaa 69  Q
    ||||| |||||||||||| |||||||||| ||||||| | ||||||||||    
T  28082392 agaggtgtctcctactgcaccaccctaatcatattaataaaaagataaaa 28082343  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 144 - 287
Target Start/End: Complemental strand, 16060517 - 16060373
Alignment:
Q  144 cgaactaaaagcaagagggattgcaatcccttaaaaactagcgagtcgg---tcggttggaagaaccaaccttgaaccctttgctagcctcagtcaccga 240  Q
    ||||||||||||||||||| | |  ||||| |||||||||| ||| ||    | |||||||||||||||||||||||||||||||||| |||||||||      
T  16060517 cgaactaaaagcaagaggggtcgatatcccctaaaaactagtgaggcgaatattggttggaagaaccaaccttgaaccctttgctagcttcagtcacctg 16060418  T
Q  241 ctttgacttcttcttttttcttgggaccaccaactgaaattgatgat 287  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||||    
T  16060417 ctttgacttct--ttttttcttggaaccaccaactgaaattgatgat 16060373  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 4777156 - 4777231
Alignment:
Q  209 accttgaaccctttgctagcctcagtcaccgactttgacttcttcttttttcttgggaccaccaactgaaattgatgat 287  Q
    ||||||||||||||||||||||||||||||  ||||||   ||||||||||||||| ||||||||||||||||||||||    
T  4777156 accttgaaccctttgctagcctcagtcacctgctttga---cttcttttttcttggaaccaccaactgaaattgatgat 4777231  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 16060659 - 16060592
Alignment:
Q  5 aaaattatggggagcagaggagtctcctactgctccaccctaattatattaagagaaagataaaagta 72  Q
    |||||||||||||||||  | |||||||| ||| |||||||||||||||| | ||||||||| |||||    
T  16060659 aaaattatggggagcagctgggtctcctattgcaccaccctaattatattgaaagaaagatataagta 16060592  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 287
Target Start/End: Complemental strand, 41708376 - 41708236
Alignment:
Q  144 cgaactaaaagcaagagggattgcaatcccttaaaaactagcgagtcggtcggttggaagaaccaaccttgaaccctttgctagcctcagtcaccgactt 243  Q
    |||| ||||| ||||||||| ||| ||||  |||||||||| ||| || || |||||||||||||| ||| || |||||||||| ||||||||||  |||    
T  41708376 cgaagtaaaaacaagagggactgctatcctctaaaaactagtgagacgatctgttggaagaaccaatcttaaatcctttgctagactcagtcacctgctt 41708277  T
Q  244 tgacttcttcttttttcttgggaccaccaactgaaattgatgat 287  Q
    |||    ||| |||||||||| | ||||||||||||||||||||    
T  41708276 tga---tttcatttttcttggaatcaccaactgaaattgatgat 41708236  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 287
Target Start/End: Complemental strand, 8231608 - 8231465
Alignment:
Q  144 cgaactaaaagcaagagggattgcaatcccttaaaaactagcgagtcggtcggttggaagaaccaaccttgaaccctttgctagcctcagtcaccgactt 243  Q
    ||||||||||||||||||||| |   |||| | |||| ||| ||| ||  |||||||||| ||||| ||| || | ||||||||||| ||| |    |||    
T  8231608 cgaactaaaagcaagagggatcgttgtccccttaaaattagtgaggcgagcggttggaagcaccaatcttaaatcatttgctagccttagttagttcctt 8231509  T
Q  244 tgacttcttcttttttcttgggaccaccaactgaaattgatgat 287  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||    
T  8231508 tgacttcttcttttttcttggaaccaccaactaaaattaatgat 8231465  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 47327223 - 47327174
Alignment:
Q  4 aaaaattatggggagcagaggagtctcctactgctccaccctaattatat 53  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  47327223 aaaaattttggggagcagaggggtctcctgctgctccaccctaattatat 47327174  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 47342019 - 47341970
Alignment:
Q  4 aaaaattatggggagcagaggagtctcctactgctccaccctaattatat 53  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  47342019 aaaaattttggggagcagaggggtctcctgctgctccaccctaattatat 47341970  T

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