View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1894_low_43 (Length: 291)
Name: NF1894_low_43
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_43 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 24116583 - 24116848
Alignment:
| Q |
19 |
ctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgactttcgaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
24116583 |
ctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgacttccgaaa |
24116682 |
T |
|
| Q |
119 |
agaaaaacaccatattctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24116683 |
agaaaaacaccatattctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaat |
24116782 |
T |
|
| Q |
219 |
ccaaccaagttcttgtaggattagcttctccatttgacatatttcttctggcatataagtataatc |
284 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
24116783 |
ccaaccaagtttttgtaggattagcttctccatttgacatatttcttccggcatataaatataatc |
24116848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 23689892 - 23689627
Alignment:
| Q |
19 |
ctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgactttcgaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||| |
|
|
| T |
23689892 |
ctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcagacaatggaatgatttgtcaagctgagttccgaaa |
23689793 |
T |
|
| Q |
119 |
agaaaaacaccatattctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaat |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| || ||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23689792 |
agaaaaacaccatgttctccatgatcttgtcttcatcagaagaaacacatgcctttacgtttctaacaagaaaaacataaggtgttggaaccgttaaaat |
23689693 |
T |
|
| Q |
219 |
ccaaccaagttcttgtaggattagcttctccatttgacatatttcttctggcatataagtataatc |
284 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23689692 |
ccaaccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatc |
23689627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 24062129 - 24061864
Alignment:
| Q |
19 |
ctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgactttcgaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||| |
|
|
| T |
24062129 |
ctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcagacaatggaatgatttgtcaagctgagttccgaaa |
24062030 |
T |
|
| Q |
119 |
agaaaaacaccatattctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaat |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| || ||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24062029 |
agaaaaacaccatgttctccatgatcttgtcttcatcagaagaaacacatgcctttacgtttctaacaagaaaaacataaggtgttggaaccgttaaaat |
24061930 |
T |
|
| Q |
219 |
ccaaccaagttcttgtaggattagcttctccatttgacatatttcttctggcatataagtataatc |
284 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24061929 |
ccaaccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatc |
24061864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 24108876 - 24109133
Alignment:
| Q |
19 |
ctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgactttcgaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
24108876 |
ctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcgcacacaatagaatgatttgtcaagctgagttcagaaa |
24108975 |
T |
|
| Q |
119 |
agaaaaacaccatattctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaat |
218 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| |||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24108976 |
agaaaaacaccatcttctccatgatcttatcttcatcagataaaaggcatgtccttatgtttctaataagaaaaacataaggtgttggaaccgttaaaat |
24109075 |
T |
|
| Q |
219 |
ccaaccaagttcttgtaggattagcttctccatttgacatatttcttctggcatataa |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24109076 |
ccaaccaagttcttgtaggattagcttctccatttgacatatttcttttggcatataa |
24109133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 24614787 - 24614526
Alignment:
| Q |
23 |
caacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgactttcgaaaagaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||||||||||| | | || ||||| |
|
|
| T |
24614787 |
caacaacaaaccttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctcagctcagagaagaa |
24614688 |
T |
|
| Q |
123 |
aaacaccatattctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaa |
222 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24614687 |
aaacaccatgttctccatgatcttgtcttgatcggataaaagacacgctctcatgtttctaacaagaaaaacataaggtgttggaaccgttaatatccaa |
24614588 |
T |
|
| Q |
223 |
ccaagttcttgtaggattagcttctccatttgacatatttcttctggcatataagtataatc |
284 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
24614587 |
ccaagttcttgtaggataagcttctccatttgacatatttcttccggcatataaatataatc |
24614526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 23693346 - 23693085
Alignment:
| Q |
23 |
caacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgactttcgaaaagaa |
122 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
23693346 |
caacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaa |
23693247 |
T |
|
| Q |
123 |
aaacaccatattctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaa |
222 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23693246 |
aaacaccatgtgctccatgatcttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaatccaa |
23693147 |
T |
|
| Q |
223 |
ccaagttcttgtaggattagcttctccatttgacatatttcttctggcatataagtataatc |
284 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23693146 |
ccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatc |
23693085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 23711786 - 23711525
Alignment:
| Q |
23 |
caacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgactttcgaaaagaa |
122 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
23711786 |
caacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaa |
23711687 |
T |
|
| Q |
123 |
aaacaccatattctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaa |
222 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23711686 |
aaacaccatgtgctccatgatcttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaatccaa |
23711587 |
T |
|
| Q |
223 |
ccaagttcttgtaggattagcttctccatttgacatatttcttctggcatataagtataatc |
284 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23711586 |
ccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatc |
23711525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 23730242 - 23729981
Alignment:
| Q |
23 |
caacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgactttcgaaaagaa |
122 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
23730242 |
caacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaa |
23730143 |
T |
|
| Q |
123 |
aaacaccatattctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaa |
222 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23730142 |
aaacaccatgtgctccatgatcttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaatccaa |
23730043 |
T |
|
| Q |
223 |
ccaagttcttgtaggattagcttctccatttgacatatttcttctggcatataagtataatc |
284 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23730042 |
ccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatc |
23729981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 23748697 - 23748436
Alignment:
| Q |
23 |
caacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgactttcgaaaagaa |
122 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
23748697 |
caacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaa |
23748598 |
T |
|
| Q |
123 |
aaacaccatattctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaa |
222 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23748597 |
aaacaccatgtgctccatgatcttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaatccaa |
23748498 |
T |
|
| Q |
223 |
ccaagttcttgtaggattagcttctccatttgacatatttcttctggcatataagtataatc |
284 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23748497 |
ccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatc |
23748436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 11390883 - 11390762
Alignment:
| Q |
34 |
cttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgactttcgaaaagaaaaacaccatat |
133 |
Q |
| |
|
|||||||||||||| | | |||||||||||| ||||| || ||||| |||||||| |||| || ||||||||| | | ||||||||||||||||||| |
|
|
| T |
11390883 |
cttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatat |
11390784 |
T |
|
| Q |
134 |
tctccatgatcttgtcttcatc |
155 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
11390783 |
tttccatcatcttgtcttcatc |
11390762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 11419741 - 11419862
Alignment:
| Q |
34 |
cttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgactttcgaaaagaaaaacaccatat |
133 |
Q |
| |
|
|||||||||||||| | | |||||||||||| ||||| || ||||| |||||||| |||| || ||||||||| | | ||||||||||||||||||| |
|
|
| T |
11419741 |
cttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatat |
11419840 |
T |
|
| Q |
134 |
tctccatgatcttgtcttcatc |
155 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
11419841 |
tttccatcatcttgtcttcatc |
11419862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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