View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_44 (Length: 284)
Name: NF1894_low_44
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 29879046 - 29878777
Alignment:
| Q |
1 |
acaattttgttggtgaagtaaaccaatgtggcagatctatcatcgaggtcaattatttgattctttttatgccaaattgcattattttttatatttggtt |
100 |
Q |
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| T |
29879046 |
acaattttgttggtgaagtaaaccaatgtggcagatctatcatcgaggtcaattatttgattctttttatgccaaattgcattattttttatatttggtt |
29878947 |
T |
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| Q |
101 |
tccttagataaactttgttcaatacattctgacacattaatgatgagttttcagtaagaaatagttataaatcacacatgttgagataactaacttataa |
200 |
Q |
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| T |
29878946 |
tccttagataaactttgttcaatacattctgacacattaatgatgagttttcagtaagaaatagttataaatcacacatgttgagataactaacttataa |
29878847 |
T |
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| Q |
201 |
ctcacatcccgtttgataaagaaacctgaagcatcaaattaggtgatagggaaaccatgcattgtatctg |
270 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29878846 |
ctaacatcccgtttgataaagaaacctgaagcatcaaattaggtgatagggaaaccatgcattgtatctg |
29878777 |
T |
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