View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1894_low_45 (Length: 273)
Name: NF1894_low_45
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 48007296 - 48007535
Alignment:
| Q |
13 |
aagtaatgctctcaaagcagggtatttaattttatgttgtagtatgtcattattcagtattgaatttaatcacagtctttgtgtgtggcagagggttgat |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48007296 |
aagtaatgctctaaaagcagggtatttaattttatgttgtagtatgtcattatttagtattgaatttaatcacagtctttgtgtgtggcagagggttgat |
48007395 |
T |
|
| Q |
113 |
agttattacaagcgtaattacaaggattactttgagttcgtagaagggggtttgcaaggaaaggaggaggggaagctttcagaagcagaaaagggtatcc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48007396 |
agttattacaagcgtaattacaaggattactttgagttcgtagaagggggtttgcaaggaaaggaggaggggaagctttcagaagcagaaaagggtatcc |
48007495 |
T |
|
| Q |
213 |
ttgattggcttaaagctaacaagtgatcacatatttattg |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48007496 |
ttgattggcttaaagctaacaagtgatcatatatttattg |
48007535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 1603925 - 1604129
Alignment:
| Q |
34 |
gtatttaattttatgttgtagtatgtcattattcagtattgaatttaatcacagtctttgtgtgtggcagagggttgatagttattacaagcgtaattac |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1603925 |
gtatttaattttatgttgtagtatgtcat-atttagtattcaatttaatcacagtttttgtgtgtggcagagggttgatagtaattacaagcgtaattac |
1604023 |
T |
|
| Q |
134 |
aaggattactttgagttcgtagaagggggtttgcaaggaaaggaggaggggaagctttcagaagcagaaaagggtatccttgattggcttaaagctaaca |
233 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604024 |
aaagattactttgagttcatagaagggggtttgcaagcaaaggaggaggggaagctttcagaagcagaaaagggtatccttgattggcttaaagctaaca |
1604123 |
T |
|
| Q |
234 |
agtgat |
239 |
Q |
| |
|
|||||| |
|
|
| T |
1604124 |
agtgat |
1604129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 1604389 - 1604337
Alignment:
| Q |
118 |
ttacaagcgtaattacaaggattactttgagttcgtagaagggggtttgcaag |
170 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1604389 |
ttactagcgtaattacaaggattactttgagttcatagaagggggtttgcaag |
1604337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University