View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_5 (Length: 635)
Name: NF1894_low_5
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 16 - 618
Target Start/End: Complemental strand, 25967674 - 25967065
Alignment:
| Q |
16 |
atcaacgaaaaagagatgaaattaatttgtcttgcatgtggaatttttattttaataaatcacgtgggaatttttaattacccgttcatatacataaagt |
115 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25967674 |
atcaacgaaaaagagataaaattaatttgtcttgcatgtggaatttttattttaataaatcacgtgggaatttttaattacatgttcatatacataaagt |
25967575 |
T |
|
| Q |
116 |
ccaattagaataataattaataagt-------gctagtttgataagtaatttgattgatcatatattaatattttttcatatgatgtcacagattgaagc |
208 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25967574 |
ccaattagaataataattaataagtaacttcggctagtttgataagtaatttgattgatcatatattaatattttttcatatgatgtcacagattgaagc |
25967475 |
T |
|
| Q |
209 |
accgtggtccagactggagtgggctccaccaacatggtgataactatttggctcatcaaaggttagccatcgttgatcctgcttctggtgatcaacctct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25967474 |
accgtggtccagactggagtgggctccaccaacatggtgataactatttggctcatcaaaggttagccattgttgatcctgcttctggtgatcaacctct |
25967375 |
T |
|
| Q |
309 |
cttcaatgaagataaatcaattattgtcacggaaataatattctatagtttattacattttttatactatatagtttttaaagtggtagtaacatataaa |
408 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25967374 |
cttcaatgaagataaatcaattattgtcacggtaataatattctatagtttattacattttttatactatatagtttttaaagtggtagtaacatataaa |
25967275 |
T |
|
| Q |
409 |
ttttatcataaaattcaggtgaatggagagatctacaatcatgaagacctcaggaaacaattgcctaatcacaaatttcgtacacaatgtgactgtgatg |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25967274 |
ttttatcataaaattcaggtgaatggagagatctacaatcatgaagacctcaggaaacaattgcctaatcacaaattccgtacacaatgtgactgtgatg |
25967175 |
T |
|
| Q |
509 |
ttattgcacacctggttagtatgtcgcggtctaggttgcggtcgcggaccgttatttaaaacattgctaattattgtaccaagaatgttattgattttgg |
608 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25967174 |
ttattgcacacctggttagtatgtcacggtctaggttgcggtcgtggacctttatttaaaacattgctaattattgtaccattaatgttattgattttgg |
25967075 |
T |
|
| Q |
609 |
taatttttgt |
618 |
Q |
| |
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|||||||||| |
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| T |
25967074 |
taatttttgt |
25967065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 197 - 340
Target Start/End: Complemental strand, 30274833 - 30274690
Alignment:
| Q |
197 |
acagattgaagcaccgtggtccagactggagtgggctccaccaacatggtgataactatttggctcatcaaaggttagccatcgttgatcctgcttctgg |
296 |
Q |
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||||||||||||||||||| || || |||||||||||||||||||||||||| || |||||| || ||| |||||||||| ||||||||||||||||| |
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| T |
30274833 |
acagattgaagcaccgtggccctgattggagtgggctccaccaacatggtgactgctttttggcacaccaacggttagccatagttgatcctgcttctgg |
30274734 |
T |
|
| Q |
297 |
tgatcaacctctcttcaatgaagataaatcaattattgtcacgg |
340 |
Q |
| |
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|||||||||||||| |||||||| ||||| | |||||||||| |
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| T |
30274733 |
ggatcaacctctctttaatgaagacaaatctgtcattgtcacgg |
30274690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 529
Target Start/End: Complemental strand, 30274420 - 30274314
Alignment:
| Q |
423 |
tcaggtgaatggagagatctacaatcatgaagacctcaggaaacaattgcctaatcacaaatttcgtacacaatgtgactgtgatgttattgcacacctg |
522 |
Q |
| |
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|||||| ||||||||||| ||||| ||||||| ||||||||||| || ||||||||| ||| || || | |||| |||||||||||||||||| || |
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| T |
30274420 |
tcaggtaaatggagagatttacaaccatgaagctctcaggaaacagctgtctaatcacacattccgaacgggaagtgattgtgatgttattgcacacttg |
30274321 |
T |
|
| Q |
523 |
gttagta |
529 |
Q |
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||||||| |
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|
| T |
30274320 |
gttagta |
30274314 |
T |
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