View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_50 (Length: 257)
Name: NF1894_low_50
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 3972109 - 3972347
Alignment:
| Q |
4 |
ataggcacaaactgtagatccatgaaatggattgaattagtgtattggggggaattttttgaataaattctaatagttaannnnnnnctcctcaagataa |
103 |
Q |
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| T |
3972109 |
ataggcacaaactgtagatccatgaaatggattgaattagtgtattggggggaattttttgaataaattctaatagttaatttttttctcctcaagataa |
3972208 |
T |
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| Q |
104 |
accgaaccgacctacgagctctatcaatccacagtatattactatattggtggaattgagcatggcacttgggaagtatacatccatattgaagggagtg |
203 |
Q |
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| T |
3972209 |
accgaaccgacctacgagctctatcaatccatagtatattactatattggtggaattgagcatggcacttgggaagtatacatccatattgaagggagtg |
3972308 |
T |
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| Q |
204 |
actattttaaattagtttttaaatgtgagatgatgatag |
242 |
Q |
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| T |
3972309 |
actattttaaattagtttttaaatgtgagatgatgatag |
3972347 |
T |
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