View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_54 (Length: 251)
Name: NF1894_low_54
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 3015449 - 3015305
Alignment:
| Q |
18 |
aattttcattccaaaattttcacctccccgctttaacagcaggaggataaacgtatccaaggccacaaaaaataacacagttgaatttacccccaatgca |
117 |
Q |
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| T |
3015449 |
aattttcattccaaaattttcacctccccgttttaacagcaggaggataaacgtatccaaggccacaaaaaataacacagttgaatttacccccaatgca |
3015350 |
T |
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| Q |
118 |
agcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacat |
162 |
Q |
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| T |
3015349 |
agcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacat |
3015305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 3015306 - 3015243
Alignment:
| Q |
188 |
atctgaattataaacgatacctttaaaatgccttgaaggatatctactcccaaaacaatggaat |
251 |
Q |
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| T |
3015306 |
atctgaattataaatgatacctttaaaatgccttgaaggatatttactcccaaaacaatggaat |
3015243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 246
Target Start/End: Complemental strand, 44629462 - 44629326
Alignment:
| Q |
109 |
cccaatgcaagcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacattgcaaccacaatgagagaaaagattatctgaattataaacgat-ac |
207 |
Q |
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| T |
44629462 |
cccaaggcaagcaatacaatcttatgcagagaaaactgctatcaatacaaacattgcatccacattgaaa--aaagttcgtctgaattaaaaagaattac |
44629365 |
T |
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| Q |
208 |
ctttaaaatgccttgaaggatatctactcccaaaacaat |
246 |
Q |
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| T |
44629364 |
ctttaaaatgccttcaaggatatcaactcccaaaacaat |
44629326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 44607863 - 44607824
Alignment:
| Q |
203 |
gatacctttaaaatgccttgaaggatatctactcccaaaa |
242 |
Q |
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| T |
44607863 |
gatacctttaaaatgcctttaaggatatcaactcccaaaa |
44607824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 40671533 - 40671569
Alignment:
| Q |
212 |
aaaatgccttgaaggatatctactcccaaaacaatgg |
248 |
Q |
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| T |
40671533 |
aaaatgccttgaaggacatctactcccaaaacaatgg |
40671569 |
T |
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