View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1894_low_58 (Length: 248)
Name: NF1894_low_58
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_58 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 12186242 - 12186106
Alignment:
| Q |
108 |
caaagattcgatagagagatttcatttccagtttcattttcgaaactaaacactaaacacctgacaca------aaggctaagattaatatcaacacgca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
12186242 |
caaagattcgatagagagatttcatttccagtttcattttcgaaactaaacactaaacacctgacacaatgactaaggctaagattaatatcaacacaca |
12186143 |
T |
|
| Q |
202 |
c--cttattcttcttaccatatttctctatttatttt |
236 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12186142 |
cctcttattcttcttaccatatttctctatttatttt |
12186106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 12186407 - 12186313
Alignment:
| Q |
19 |
agatcattacattaactttcattcacctgaatatagcataaaacacattaagaataagcaacaatactttattagaggaaaactcaaagcaaaga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12186407 |
agatcattacattaactttcattcacctgaatatagcataaaacacattaagaataagcaacaatactttattagaggaaaactcaaagcaaaga |
12186313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 12187415 - 12187348
Alignment:
| Q |
25 |
ttacattaactttcattcacctgaatatagcataaaacacattaagaataagcaacaatactttatta |
92 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
12187415 |
ttacagtaattttcattcacctgaatatagcagaaaacacgttaagaataagtaacaatattttatta |
12187348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 5446132 - 5446195
Alignment:
| Q |
49 |
atatagcataaaacacattaag-aataagcaacaatactttattagaggaaaactcaaagcaaaga |
113 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| | ||||||||| |||||| ||||| |
|
|
| T |
5446132 |
atatagcagaaaacacattaagtaataagcaacaatactt--tgagaggaaaattcaaagaaaaga |
5446195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 5455176 - 5455239
Alignment:
| Q |
49 |
atatagcataaaacacattaag-aataagcaacaatactttattagaggaaaactcaaagcaaaga |
113 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| | ||||||||| |||||| ||||| |
|
|
| T |
5455176 |
atatagcagaaaacacattaagtaataagcaacaatactt--tgagaggaaaattcaaagaaaaga |
5455239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 8979886 - 8979842
Alignment:
| Q |
68 |
aagaataagcaacaatactttattagaggaaaactcaaagcaaag |
112 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
8979886 |
aagaaaaagcaacaatacttttttagaggaagattcaaagcaaag |
8979842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University