View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_60 (Length: 247)
Name: NF1894_low_60
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_60 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 9832712 - 9832948
Alignment:
| Q |
11 |
aaggcggtaagcatttaaagtcatttgcgtacatttcatttttcaggacaagttctgatgttggtttttgtgtgggatgttttcatgtgtttatctatct |
110 |
Q |
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| T |
9832712 |
aaggcggtaagcatttaaagtcatttgcgtacatttcatttttcaggaaaagttctgatgttggtttttgtgtgggatgttttcatgtgtttatctatct |
9832811 |
T |
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| Q |
111 |
ctacattgtccctgaatattaaatttttctttcagcttggagtcgatactattccagtcctcgttggcccagtatcatacttgttgctctccaagcttgc |
210 |
Q |
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| T |
9832812 |
ctacattgtccctgaatattaaatttttctttcagcttggagtcgatactattccagtcctcgttggcccagtatcatacttgttgctctccaagcttgc |
9832911 |
T |
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| Q |
211 |
taacggtgttgatccatcctttgatcttcttactctc |
247 |
Q |
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| T |
9832912 |
taacggtgttgatccatcctttgatcttcttactctc |
9832948 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 33469500 - 33469429
Alignment:
| Q |
133 |
atttttctttcagcttggagtcgatactattccagtcctcgttggcccagtatcatacttgttgctctccaa |
204 |
Q |
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| T |
33469500 |
atttgtcttacagcttggagtagacactgttcccgttcttgttggccctgtttcatacttgttgctctccaa |
33469429 |
T |
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