View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_65 (Length: 238)
Name: NF1894_low_65
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42834122 - 42834344
Alignment:
| Q |
1 |
gaagaagatgttacttaaatcaggtcttcgacctctcaatattgatttgtctcttagctctgatgatgatacttgtagctcggtggtttctacaaacgtg |
100 |
Q |
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| T |
42834122 |
gaagaagatgttacttaaatcaggtcttcgacctctcaatattgatttgtctcttagctctgatgatgatacttgtagctcggtggtttctacaaacgtg |
42834221 |
T |
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| Q |
101 |
ggctgtgaaacacctttatcgtcttgggatttcgaacctgaaattgatatcaacttagaagagaactatgttgatgtagaagaacaaaactatatggaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42834222 |
ggctgtgaaacacctttatcgtcttgggatttcgaacctgaaattgatatcaacttagaagagaactatgttgatgtagaagaacaaaacgatatggaca |
42834321 |
T |
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| Q |
201 |
atagaagttatgatgatttgatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42834322 |
atagaagttatgatgatttgatc |
42834344 |
T |
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