View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1894_low_66 (Length: 237)

Name: NF1894_low_66
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1894_low_66
NF1894_low_66
[»] chr5 (15 HSPs)
chr5 (22-237)||(8529063-8529278)
chr5 (24-237)||(8535621-8535840)
chr5 (23-237)||(1600066-1600284)
chr5 (22-236)||(9074491-9074708)
chr5 (23-237)||(8641491-8641720)
chr5 (49-235)||(2844855-2845047)
chr5 (49-235)||(2856682-2856874)
chr5 (49-235)||(2874292-2874484)
chr5 (185-237)||(8636987-8637039)
chr5 (26-237)||(8644332-8644546)
chr5 (191-237)||(2904938-2904984)
chr5 (185-237)||(8677934-8677986)
chr5 (25-99)||(2904774-2904848)
chr5 (126-215)||(8547984-8548073)
chr5 (26-87)||(8637140-8637201)
[»] chr4 (1 HSPs)
chr4 (23-237)||(9443224-9443438)
[»] chr7 (2 HSPs)
chr7 (22-237)||(48361617-48361838)
chr7 (57-237)||(35779948-35780119)
[»] chr6 (1 HSPs)
chr6 (126-237)||(16716466-16716577)
[»] scaffold0627 (1 HSPs)
scaffold0627 (126-237)||(4767-4878)
[»] chr1 (2 HSPs)
chr1 (179-237)||(26324198-26324256)
chr1 (49-168)||(5130959-5131081)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 8529278 - 8529063
Alignment:
Q  22 cagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgttttttgttgta 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529278 cagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcataatgttttttgttgta 8529179  T
Q  122 ggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattgg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529178 ggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattgg 8529079  T
Q  222 agaatcatggactaag 237  Q
    ||||||||||||||||    
T  8529078 agaatcatggactaag 8529063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 237
Target Start/End: Complemental strand, 8535840 - 8535621
Alignment:
Q  24 gcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatg------ttttttgt 117  Q
    |||||||||||||||| ||||||||||||||| ||||| | || ||||||||||||||||||||||  |||||||||||||||||       || || ||    
T  8535840 gcaaaggtcaatattgattttctgctttgaaagtgagacgctgaagtcatttccttctcctccacagatgtttggaaatcataataatggatttcttagt 8535741  T
Q  118 tgtaggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggca 217  Q
      ||| | |||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  8535740 aatagacatattagcatgggagaattaaagggatttctttacatttgtgattcgacctttttatctgatgtttcaatgtgggttatgaatgaatatggca 8535641  T
Q  218 ttggagaatcatggactaag 237  Q
    ||||||||||||||||||||    
T  8535640 ttggagaatcatggactaag 8535621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 1600066 - 1600284
Alignment:
Q  23 agcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgtttt---ttgttg 119  Q
    |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||  |     |||| |    
T  1600066 agcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacatgagtttggaaatcataataatggaacttgtgg 1600165  T
Q  120 ta---ggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggc 216  Q
    ||   | | | |||||||||||||||||||||||||||| |||||||||||  | |||||| ||||| ||||| |||||||||||||||| |||||||||    
T  1600166 taacagccatgttagcatgggagaattaaagggatttctttacatttgtga--ctacctttttatctgatgttccaatgtgggttatgaaggaatatggc 1600263  T
Q  217 attggagaatcatggactaag 237  Q
    |||| ||||||||||||||||    
T  1600264 attgaagaatcatggactaag 1600284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 9074491 - 9074708
Alignment:
Q  22 cagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgtt--ttttgttg 119  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||  |    ||||||    
T  9074491 cagcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgttg 9074590  T
Q  120 -taggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcat 218  Q
     ||       || |||||||||||||||||||||||| |||||||||||   ||| ||| ||||| |||||||| |||||||||||||||||||||| ||    
T  9074591 ataacagacatatcatgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtat 9074690  T
Q  219 tggagaatcatggactaa 236  Q
    || |||||||||||||||    
T  9074691 tgaagaatcatggactaa 9074708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 8641720 - 8641491
Alignment:
Q  23 agcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataat---------gtttt 113  Q
    ||||||||||||||||   |||||| || |||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||          ||      
T  8641720 agcaaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttccttctcctccacatgtgtttggaaatcataataataatggaattca 8641621  T
Q  114 ttgttgtaggcctattagcatgggagaattaaagggatttctatacatttgtgatc------cgacctttatatctaatgtttcaatgtgggttatgaat 207  Q
    | ||   |||| ||||||||||||||| |||||||||||||  |||||||||||||      |||||||| | | | ||||  || ||||||||||||||    
T  8641620 tggtaacaggcttattagcatgggagagttaaagggatttccttacatttgtgatcgtgactcgacctttttctttgatgtcacagtgtgggttatgaat 8641521  T
Q  208 gaatatggcattggagaatcatggactaag 237  Q
    ||||||||||||||||||||||||||||||    
T  8641520 gaatatggcattggagaatcatggactaag 8641491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 235
Target Start/End: Original strand, 2844855 - 2845047
Alignment:
Q  49 tttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatc---ataatgttttt---tgttgtaggcctattagcatgggagaat 142  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||   ||||||  |||     | | | |||||||||  |||||||||    
T  2844855 tttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccttagcatgcctattagattgggagaat 2844954  T
Q  143 taaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggacta 235  Q
    | ||||||||||| ||||||||| ||    | | | |    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2844955 tgaagggatttctttacatttgtcatatatcgtctcttgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggacta 2845047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 235
Target Start/End: Original strand, 2856682 - 2856874
Alignment:
Q  49 tttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatc---ataatgttttt---tgttgtaggcctattagcatgggagaat 142  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||   ||||||  |||     | | | |||||||||  |||||||||    
T  2856682 tttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatgcctattagattgggagaat 2856781  T
Q  143 taaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggacta 235  Q
    | ||||||||||| ||||||||| ||    | | | |    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2856782 tgaagggatttctttacatttgtcatagatcgtctctcgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggacta 2856874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 235
Target Start/End: Original strand, 2874292 - 2874484
Alignment:
Q  49 tttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatc---ataatgttttt---tgttgtaggcctattagcatgggagaat 142  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||   ||||||  |||     | | | |||||||||  |||||||||    
T  2874292 tttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatgcctattagattgggagaat 2874391  T
Q  143 taaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggacta 235  Q
    | ||||||||||| ||||||||| ||    | | | |    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2874392 tgaagggatttctttacatttgtcatagatcgtctctcgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggacta 2874484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 8637039 - 8636987
Alignment:
Q  185 atgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaag 237  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8637039 atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaag 8636987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 8644546 - 8644332
Alignment:
Q  26 aaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatca---taatgttttttgttgtag 122  Q
    ||||||| ||||||  |||||| ||||||| |||||||||||| ||||||||||||||||||   ||||||  ||||||   |||||  ||| || |||     
T  8644546 aaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaa 8644450  T
Q  123 ---gcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatc-taatgtttcaatgtgggttatgaatgaatatggcat 218  Q
       || |||| ||||||||||||||| |||||| || |||||||| ||| | |  ||  | || | ||||| |||||||||||||||||||||||| |||    
T  8644449 cgagcgtattcgcatgggagaattaaggggattactttacatttgcgatac-atattcttttcgtgatgttgcaatgtgggttatgaatgaatatgacat 8644351  T
Q  219 tggagaatcatggactaag 237  Q
    |||||||||||||||||||    
T  8644350 tggagaatcatggactaag 8644332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 2904938 - 2904984
Alignment:
Q  191 caatgtgggttatgaatgaatatggcattggagaatcatggactaag 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2904938 caatgtgggttatgaatgaatatggcattggagaatcatggactaag 2904984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 8677986 - 8677934
Alignment:
Q  185 atgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaag 237  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  8677986 atgttgcaatgtgggatatgaatgaatatggcattggagaatcatggactaag 8677934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 2904774 - 2904848
Alignment:
Q  25 caaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttgga 99  Q
    |||| ||||||||||  |||| | ||||||| ||||||| |||| ||||||||||||||||||||| ||||||||    
T  2904774 caaaagtcaatattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctccacatatgtttgga 2904848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 8547984 - 8548073
Alignment:
Q  126 tattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatgg 215  Q
    ||||||| |||||||||||||||||| ||| |||||||||||   || || | | ||| ||||| |||||||||||||||| ||||||||    
T  8547984 tattagcttgggagaattaaagggatgtctttacatttgtgactggaactatctctcttatgttacaatgtgggttatgaacgaatatgg 8548073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 8637201 - 8637140
Alignment:
Q  26 aaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctcca 87  Q
    ||||||| ||||||  |||||| || ||||||||||||||||| ||||||||||||||||||    
T  8637201 aaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatcatttccttctcctcca 8637140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 9443438 - 9443224
Alignment:
Q  23 agcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgttttttgttgtag 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  9443438 agcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgtttattgtagtag 9443339  T
Q  123 gcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattgga 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443338 gcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattgga 9443239  T
Q  223 gaatcatggactaag 237  Q
    |||||||||||||||    
T  9443238 gaatcatggactaag 9443224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 48361617 - 48361838
Alignment:
Q  22 cagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatg------tttttt 115  Q
    |||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||       || ||     
T  48361617 cagcaaaggtcaatattgtttttctgttttgaaagtgagagggtgcagtcatttccttctcctccacatgtgtttggaaatcataataatggaattcttg 48361716  T
Q  116 gttgtaggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatgg 215  Q
    ||   |||| |||||||||||||||||||||||||||||| |||||||||||  ||||||||  |||| |||||||||||||||||||||||||||||||    
T  48361717 gtaacaggcatattagcatgggagaattaaagggatttctttacatttgtgactcgacctttgcatctgatgtttcaatgtgggttatgaatgaatatgg 48361816  T
Q  216 cattggagaatcatggactaag 237  Q
     |||| |||||||| |||||||    
T  48361817 tattgaagaatcatagactaag 48361838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 35780119 - 35779948
Alignment:
Q  57 tgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgttttttgttgtaggcctattagcatgggagaattaaagggatttcta 156  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||| |         |  ||||| ||||||||||||||||||||||||||||||     
T  35780119 tgagaggttgcagccatttccttctcctccacatgtgtttggaattcatga---------taataggcgtattagcatgggagaattaaagggatttctt 35780029  T
Q  157 tacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaag 237  Q
    |||||||||||   ||  ||| |   | ||||| |||||||||||||||||||  ||||||||| |||||| |||||||||    
T  35780028 tacatttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatgagcatggcattgaagaatcgtggactaag 35779948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 16716577 - 16716466
Alignment:
Q  126 tattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaa 225  Q
    |||||||||||||||||||||||||||||||||||||| |||  | | |||  |     ||||| |||||||||||||||||||||||||||||||||||    
T  16716577 tattagcatgggagaattaaagggatttctatacatttctgactcaaacttcttcgaatatgttacaatgtgggttatgaatgaatatggcattggagaa 16716478  T
Q  226 tcatggactaag 237  Q
    ||||||||||||    
T  16716477 tcatggactaag 16716466  T

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Target: scaffold0627 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 4878 - 4767
Alignment:
Q  126 tattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaa 225  Q
    |||||||||||||||||||||||||||||| |||||||||||  | | ||   ||    ||||| ||||||||||||||||||||||||||||||| |||    
T  4878 tattagcatgggagaattaaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaatatggcattggtgaa 4779  T
Q  226 tcatggactaag 237  Q
    ||||||||||||    
T  4778 tcatggactaag 4767  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 26324198 - 26324256
Alignment:
Q  179 tatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaag 237  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26324198 tatctgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaag 26324256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 5131081 - 5130959
Alignment:
Q  49 tttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgttttttgttgta---ggcctattagcatgggagaattaa 145  Q
    ||||||| |||||| ||||| ||||| |||||||||||||| ||||||| ||||||||||| ||||| | | |    || |||  |||||||||||||||    
T  5131081 tttgaaagtgagagattgcaatcattcccttctcctccacacgtgtttgaaaatcataatgatttttatggcaccgagcatatcggcatgggagaattaa 5130982  T
Q  146 agggatttctatacatttgtgat 168  Q
    |||||||||| ||||||| ||||    
T  5130981 agggatttctttacatttctgat 5130959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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