View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_7 (Length: 519)
Name: NF1894_low_7
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Original strand, 7970382 - 7970874
Alignment:
| Q |
11 |
caaagggaaaaatctcctttcaaaacaggtttagttaaagaaagagaaatcaaagaaatgatagcagaggtgaaactatcaaaaaaccctactgatgatt |
110 |
Q |
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| T |
7970382 |
caaagggaaaaatctcctttcaaaacaggtttagttaaagaaagagaaatcaatgaaatgatagcagaggtgaaactatcaaaaaaccctactgatgatt |
7970481 |
T |
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| Q |
111 |
attcatcagcactcgaaagtacagactcaattcaaacaggtgatcttttcttttctcgtgaatgcaatgccttgcaagcgaagaattcttcaatgccnnn |
210 |
Q |
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| T |
7970482 |
attcatcagcactcgaaagtacagactcaattcaaacaggtgatcttttcttttctcgtgaatgcaatgccttgcaagcgaagaattcttcaatgccaaa |
7970581 |
T |
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| Q |
211 |
nnnngttcaacaatacgagtattttagccctagacctgtgatcactaccattaatcccattaccaacccatgtgaaagtggtaaacacggtatgaatatg |
310 |
Q |
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| T |
7970582 |
aaaagttcaacaatacgagtattttagccctagacaagtgatcaccaccattaatcccattaccaacccatgtgaaagtggtaaacacggtatgaatatg |
7970681 |
T |
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| Q |
311 |
aatatgccaagaaactattcaagtaatgtgttgttgtctcgaacatcggcagccacatcaatcagaaagggaagtggaactgggaagcctagtgccaact |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7970682 |
aatatgccaagaaactattcaagtaatgtgttgttgtctcgaacatcggcagccacatcaatcagaaagggaagtggaactgggaagcctagtgctaact |
7970781 |
T |
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| Q |
411 |
ctagtgtgaaaagtgatgctagtacaaagacaaccgaaagcatgaggaaattcacatccaacagaaaaaagaaccagaaagatgcatggtttg |
503 |
Q |
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| T |
7970782 |
ctagtgtgaaaagtgatgctagtacaaagacaaccgaaagcatgaggaaattcacatccaacagaaaaaagaaccagaaagatgcatggtttg |
7970874 |
T |
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