View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_71 (Length: 224)
Name: NF1894_low_71
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 42667330 - 42667128
Alignment:
| Q |
1 |
acattataaattctgaacctccaatgaagaagcagcatagacataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgtgcc |
100 |
Q |
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| T |
42667330 |
acattataaattctgaacctccaatgaagaagcagcatagacataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgtgcc |
42667231 |
T |
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| Q |
101 |
ttcttattcttctccttttcctgatttgttctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcacaacatcatgtttcagctatg |
200 |
Q |
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| T |
42667230 |
ttcttattcttctccttttcctgatttgttctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcacaaaatcatgtttcagctatg |
42667131 |
T |
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| Q |
201 |
att |
203 |
Q |
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||| |
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| T |
42667130 |
att |
42667128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 42667399 - 42667311
Alignment:
| Q |
1 |
acattataaattctgaacctccaatgaagaagcagcatagac---ataaaagcgttgaaaattttcagagcattctgaattctgaacct |
86 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| | |||||||||||| |
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| T |
42667399 |
acattataaattctgaacctccaatgaagaagaagcatagacataataaaagcgttgaaaattttcagaacattataaattctgaacct |
42667311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 42667439 - 42667380
Alignment:
| Q |
27 |
aagaagcagcatagacataaaagcgttgaaaattttcagagcattctgaattctgaacct |
86 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||| | |||||||||||| |
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| T |
42667439 |
aagaagaagcatagacataaaagcgttgaaaattttcagaacattataaattctgaacct |
42667380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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