View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_low_9 (Length: 512)
Name: NF1894_low_9
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 142 - 496
Target Start/End: Original strand, 41413923 - 41414277
Alignment:
| Q |
142 |
ttacagctccaatcttcaaaaaaccatcaacagtgaggttaagaagtggattgcccatgtcaatgaccacatcgaccttgggagaagacactgatcctga |
241 |
Q |
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| T |
41413923 |
ttacagctccaatcttcaaaaaaccatcaacagtgaggttaagaagtggattgcccatgtcaatgaccacatcgaccttgggagaagacactgatcctga |
41414022 |
T |
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| Q |
242 |
aatgctgctatgaggcatttttcacactcacacttctttcttacttctttgctttgtttagctaccagcttgaatgttaaggaaggtggtgtatactata |
341 |
Q |
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| T |
41414023 |
aatgctgctatgaggcatttttcacactcacacttctttcttacttctttgctttgtttagctaccagcttgaatgttaaggaaggtggtgtataccata |
41414122 |
T |
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| Q |
342 |
tactactatatagcaaggggttctcacacaaaagtgtgaccacttatggttgtgattgaaagttgagaaaagcaatctatcatactacatgcatagtaca |
441 |
Q |
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| T |
41414123 |
tactactatatagcaaggggttctcacacaaaagtgtgaccacttatggttgtgattgaaagttgagaaaagcaatctatcatactacatgcatagtaca |
41414222 |
T |
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| Q |
442 |
tttttaaataattaaaagttcacggttaataaacgaggatggcttttgtgcactc |
496 |
Q |
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| T |
41414223 |
tttttaaataattaaaagttcacggttaataaacgaggatggcttttgtgcactc |
41414277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 41413792 - 41413842
Alignment:
| Q |
7 |
tcgaagaatatgataggtatcctctgcaagtgcccttgtggctgcaacctg |
57 |
Q |
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| T |
41413792 |
tcgaacaatatgataggtatcctctgcaagtgcccttgtggctgcaacctg |
41413842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 142 - 302
Target Start/End: Original strand, 41421174 - 41421332
Alignment:
| Q |
142 |
ttacagctccaatcttcaaaaaaccatcaacagtgaggttaagaagtggattgcccatgtcaatgaccacatcgaccttgggagaagacactgatcctga |
241 |
Q |
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|||||| |||||||||||| ||||||||||||| || ||||| | ||||| |||||||| ||||| ||||| |||| |||||||||||||| || || |
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| T |
41421174 |
ttacagttccaatcttcaagaaaccatcaacagctagattaaggaaaggatttcccatgtctatgacaacatccacctgtggagaagacactgaaccgga |
41421273 |
T |
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| Q |
242 |
aatgctgctatgaggcatttttcacactcacacttctttcttacttctttgctttgtttag |
302 |
Q |
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| T |
41421274 |
aattctgctccaaggcatctttcaaact--cacttctttgttactttcttgttttgtttag |
41421332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 41421052 - 41421102
Alignment:
| Q |
7 |
tcgaagaatatgataggtatcctctgcaagtgcccttgtggctgcaacctg |
57 |
Q |
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| T |
41421052 |
tcgaacaatatgaaaggtatcttctgcaagtgcccttgtagctgcaacctg |
41421102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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