View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_high_11 (Length: 440)
Name: NF18950_high_11
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 3995097 - 3995504
Alignment:
| Q |
14 |
gaacacaacgtaacaaaactcaacctaaacccacacccaaaaaccatttctttcaaaagcaaaaacgcttcctttgtaaacccattcccaacataaccaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3995097 |
gaacacaacgtaacaaaactcaacctaaacccacacccaaaaaccatttctttcaaaagcaaaaacgcttcctttgtaaacccattcccaacataaccaa |
3995196 |
T |
|
| Q |
114 |
cgatcataacagtccaagcaacctcgttcctctccggcatttcatcaaacaacactctcccactctccacactctcccatttcaccaaaccttccaaaaa |
213 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3995197 |
caatcataacagtccaagcaacctcgttcctctccggcatttcatcaaacaacactctcccactctccacactctcccatttcaccaaaccttccaaaaa |
3995296 |
T |
|
| Q |
214 |
acaactccaagacacaacactacgaacttcaatcccttcaaacacttttctagcctcacccacaagcccaaatttaacatacacattcatcaaagcatta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3995297 |
acaactccaagacacaacactacgaacttcaatcccttcaaacatttttctagcctcacccacaagcccaaatttaacatacacattcatcaaagcatta |
3995396 |
T |
|
| Q |
314 |
caaactttatcaaacttcacaaatccaaatttcacaacacccacatgcatttgagacccaactttagtgtctcctccaccaagtcttgaacaagcattga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3995397 |
caaactttatcaaacttcacaaatccaaatttcacaacacccacatgcatttgagacccaactttagtgtctcctccaccaagtcttgcacaagcattga |
3995496 |
T |
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| Q |
414 |
gtgcacaa |
421 |
Q |
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|||||||| |
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| T |
3995497 |
gtgcacaa |
3995504 |
T |
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