View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18950_high_12 (Length: 429)
Name: NF18950_high_12
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 2486296 - 2486699
Alignment:
| Q |
1 |
accattaaacacaacacaacaaaaattatttatgtacgtatttgttgcttttgaattagaaatgctcacatagccacaaaaatcataaacactaacctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486296 |
accattaaacacaacacaacaaaaattatttatgta----tttgttgcttttgaattagaaatgctcacatagccacaaaaatcataaacactaacctat |
2486391 |
T |
|
| Q |
101 |
atttcattcataaacattaatctttcatacaacaaaatccaaagcatgttccatacataagagttcaaaacgaacttaaaaaattacaatatgcactatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2486392 |
--ttcattcataaacattaatctttcatacaacaaaatccaaagcatgttccatacataagagttcaaaacgaacttaaaaaatgacaatatgcactatg |
2486489 |
T |
|
| Q |
201 |
ccataataaataatgtagaatagggcacggataacactaattcctaacattgtccgttttgtgtttgaaactaatctatctgcattgtggattacttcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486490 |
ccataataaataatgtagaatagggcacggataacactaattcctaacattgcccgttttgtgtttgaaactaatctatctgcattgtggattacttcct |
2486589 |
T |
|
| Q |
301 |
tgttttgtttaacaatcacttcaattatgctcaaccaaccgatcaagacgaagacagcagcgttccacgaaacaaaagtcacttctatcaccgatgttgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486590 |
tgttttgtttaacaatcacttcaattatgctcaaccaaccgatcaagacgaagacagcagcgttccacgaaacaaaagtcacttctatcaccgatgttgc |
2486689 |
T |
|
| Q |
401 |
acttgctagc |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
2486690 |
acttgctagc |
2486699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 27088882 - 27089285
Alignment:
| Q |
1 |
accattaaacacaacacaacaaaaattatttatgtacgtatttgttgcttttgaattagaaatgctcacatagccacaaaaatcataaacactaacctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27088882 |
accattaaacacaacacaacaaaaattatttatgta----tttgttgcttttgaattagaaatgctcacatagccacaaaaatcataaacactaacctat |
27088977 |
T |
|
| Q |
101 |
atttcattcataaacattaatctttcatacaacaaaatccaaagcatgttccatacataagagttcaaaacgaacttaaaaaattacaatatgcactatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27088978 |
--ttcattcataaacattaatctttcatacaacaaaatccaaagcatgttccatacataagagttcaaaacgaacttaaaaaatgacaatatgcactatg |
27089075 |
T |
|
| Q |
201 |
ccataataaataatgtagaatagggcacggataacactaattcctaacattgtccgttttgtgtttgaaactaatctatctgcattgtggattacttcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27089076 |
ccataataaataatgtagaatagggcacggataacactaattcctaacattgcccgttttgtgtttgaaactaatctatctgcattgtggattacttcct |
27089175 |
T |
|
| Q |
301 |
tgttttgtttaacaatcacttcaattatgctcaaccaaccgatcaagacgaagacagcagcgttccacgaaacaaaagtcacttctatcaccgatgttgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27089176 |
tgttttgtttaacaatcacttcaattatgctcaaccaaccgatcaagacgaagacagcagcgttccacgaaacaaaagtcacttctatcaccgatgttgc |
27089275 |
T |
|
| Q |
401 |
acttgctagc |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
27089276 |
acttgctagc |
27089285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University