View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18950_high_13 (Length: 389)

Name: NF18950_high_13
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18950_high_13
NF18950_high_13
[»] chr7 (3 HSPs)
chr7 (1-381)||(7410686-7411052)
chr7 (92-330)||(34869768-34870006)
chr7 (294-338)||(29280858-29280902)
[»] chr1 (4 HSPs)
chr1 (89-378)||(36397817-36398109)
chr1 (177-244)||(2943318-2943385)
chr1 (175-274)||(26555336-26555435)
chr1 (172-292)||(38087739-38087859)
[»] chr8 (2 HSPs)
chr8 (172-292)||(1386462-1386582)
chr8 (169-213)||(1019562-1019606)
[»] chr3 (2 HSPs)
chr3 (177-242)||(1762720-1762785)
chr3 (175-211)||(29501636-29501672)
[»] chr4 (1 HSPs)
chr4 (204-354)||(44072442-44072592)
[»] chr5 (1 HSPs)
chr5 (185-271)||(16125795-16125881)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 7410686 - 7411052
Alignment:
Q  1 ttttaaaaggactcaaaataaaaattttagaggaatcaatttttaaagtttgtatgtttagagaaatcgattaaccaccnnnnnnnnn---gtgtgactt 97  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||  |||||||||||||||            |||||||||    
T  7410686 ttttaaaaggactcaaaataaaaaatgtagaggaatcaatttttaaagtttgtatgtttagacgaatcgattaaccacctttttttttttagtgtgactt 7410785  T
Q  98 ctttggcggtatttgaaatctcgttcatcgctagtgtgatatctcaagagttgtttcttcggatatgagaagtcacacacaacagttttttggcgcgcat 197  Q
    ||||||| |||||||| ||||||||||||| ||||||| ||||                 |||||||||||||||||||||||||||||||| |||||||    
T  7410786 ctttggcagtatttgacatctcgttcatcgttagtgtggtatc-----------------ggatatgagaagtcacacacaacagttttttgtcgcgcat 7410868  T
Q  198 gctttcaaaaagaacatttgagcttgctttcaagttatttggttggcatgtctttggatcattaggaaagaacgcaactcaagaatttttaacaataata 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  7410869 gctttcaaaaagaacatttgagcttgctttcaagttatttggttggcatgtctttggatcatttggaaagaacccaactcaagaatttttaacaataata 7410968  T
Q  298 ttgactcttgatcaacttcttcatagtattaagctccattcttggtggtagttgaaggagaatagccctggtttttcctttgct 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  7410969 ttgactcttgatcaacttcttcatagtattaagctccattcttggtggtggttgaaggagaatagccctggtttttcctctgct 7411052  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 92 - 330
Target Start/End: Original strand, 34869768 - 34870006
Alignment:
Q  92 tgacttctttggcggtatttgaaatctcgttcatcgctagtgtgatatctcaagagttgtttcttcggatatgagaagtcacacacaacagttttttggc 191  Q
    ||||||||||||  || ||||| |||| |||||||| | ||  || |||||||   ||||| ||||||||||  |  |||||||  |||| |||||||||    
T  34869768 tgacttctttggtagtgtttgatatcttgttcatcgatggttggacatctcaacgattgttacttcggatattgggtgtcacacgaaacacttttttggc 34869867  T
Q  192 gcgcatgctttcaaaaagaacatttgagcttgctttcaagttatttggttggcatgtctttggatcattaggaaagaacgcaactcaagaatttttaaca 291  Q
    ||  ||||||||| |||||||||| | || ||||||||||||||||||||||  | ||||||  |||||  ||||||| |||||| ||||||||||||||    
T  34869868 gc--atgctttcagaaagaacattcgcgcctgctttcaagttatttggttggtctatctttgagtcatttagaaagaatgcaactgaagaatttttaaca 34869965  T
Q  292 ata--atattgactcttgatcaacttcttcatagtattaag 330  Q
    | |  |||| ||||| ||||||||||||| ||| |||||||    
T  34869966 acaacatatcgactcatgatcaacttcttaataatattaag 34870006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 29280858 - 29280902
Alignment:
Q  294 aatattgactcttgatcaacttcttcatagtattaagctccattc 338  Q
    ||||||| ||| | ||||||||||| |||||||||||||||||||    
T  29280858 aatattgtctcataatcaacttcttgatagtattaagctccattc 29280902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 89 - 378
Target Start/End: Original strand, 36397817 - 36398109
Alignment:
Q  89 gtgtgacttctttggcggtatttgaaatctcgttcatcgctagtgtgatatctcaagagttgtttcttcggatatgagaagtcacacacaacagtttttt 188  Q
    |||||||||||||||  |||||||| |||| |||||||| |  |  |  |||| || ||||||| |||| ||||| ||  ||||| | ||||| ||||||    
T  36397817 gtgtgacttctttggtagtatttgatatcttgttcatcgttgattgggcatcttaacagttgttacttcagatattaggtgtcacgcgcaacaatttttt 36397916  T
Q  189 ggcgcgcatgctttcaaaaagaacatttgagcttgctttc-aagttatttggttggcatgtctttggatcattaggaaagaacgcaactcaagaattttt 287  Q
    |  | |||||| ||||||||||||||  |  ||||||||  ||||| |||||||||| | ||||||| | ||| ||||||||||||||||||||| ||||    
T  36397917 gatgtgcatgcattcaaaaagaacatccgtacttgctttttaagttgtttggttggcctctctttgggttatttggaaagaacgcaactcaagaaatttt 36398016  T
Q  288 aacaata--atattgactcttgatcaacttcttcatagtattaagctccattcttggtggtagttgaaggagaatagccctggtttttccttt 378  Q
    ||||| |  |||| ||||| ||||||||||||| |||||||| || | ||||| ||||||| | ||||||  ||| ||||  |||||||||||    
T  36398017 aacaacaacatatcgactcatgatcaacttcttgatagtatttagattcattcatggtggtggatgaaggcaaattgcccgagtttttccttt 36398109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 2943385 - 2943318
Alignment:
Q  177 caacagttttttggcgcgcatgctttcaaaaagaacatttgagcttgctttcaagttatttggttggc 244  Q
    ||||||||||||| ||||||||| |||||||||||||||   ||||||||||||||| ||||||||||    
T  2943385 caacagttttttgacgcgcatgcattcaaaaagaacattcacgcttgctttcaagttgtttggttggc 2943318  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 26555435 - 26555336
Alignment:
Q  175 cacaacagttttttggcgcgcatgctttcaaaaagaacatttgagcttgctttcaagttatttggttggcatgtctttggatcattaggaaagaacgcaa 274  Q
    ||||||| |||||| || | ||||||||||||||| | |||||  |||| ||||||||| |||||||||  ||||||||| |||||  ||||||| ||||    
T  26555435 cacaacaatttttttgcacccatgctttcaaaaaggaaatttgttcttgttttcaagttgtttggttggtctgtctttgggtcattttgaaagaaagcaa 26555336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 38087859 - 38087739
Alignment:
Q  172 acacacaacagttttttggcgcgcatgctttcaaaaagaacatttgagcttgctttcaagttatttggttggcatgtctttggatcattaggaaagaacg 271  Q
    |||||||||| | ||||| |||||||||||||||||||||  ||||    |||||||| ||| | || ||||| ||| |||||  ||||  |||||||||    
T  38087859 acacacaacaatgttttgtcgcgcatgctttcaaaaagaaactttgtttatgctttcaggttgtgtgattggcctgtgtttgggccatttagaaagaacg 38087760  T
Q  272 caactcaagaatttttaacaa 292  Q
     || | ||||||||| |||||    
T  38087759 taatttaagaattttaaacaa 38087739  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 292
Target Start/End: Original strand, 1386462 - 1386582
Alignment:
Q  172 acacacaacagttttttggcgcgcatgctttcaaaaagaacatttgagcttgctttcaagttatttggttggcatgtctttggatcattaggaaagaacg 271  Q
    |||||||  |||||||||| ||| | ||||||||||||||||||   ||||||||||||||| |||||||||| ||||||||| ||||| | ||||||||    
T  1386462 acacacataagttttttggtgcgtacgctttcaaaaagaacattcacgcttgctttcaagttgtttggttggcctgtctttgggtcatttgaaaagaacg 1386561  T
Q  272 caactcaagaatttttaacaa 292  Q
     || |  |||||||| |||||    
T  1386562 taatttgagaattttaaacaa 1386582  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 1019606 - 1019562
Alignment:
Q  169 gtcacacacaacagttttttggcgcgcatgctttcaaaaagaaca 213  Q
    ||||||| ||||||| ||||||||||||| ||||||| |||||||    
T  1019606 gtcacacgcaacagtgttttggcgcgcatactttcaataagaaca 1019562  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 1762720 - 1762785
Alignment:
Q  177 caacagttttttggcgcgcatgctttcaaaaagaacatttgagcttgctttcaagttatttggttg 242  Q
    |||||| ||||||||| |||||| ||||||||||||||||| ||||||||| ||||| ||||||||    
T  1762720 caacagctttttggcgtgcatgcattcaaaaagaacatttgcgcttgctttgaagttgtttggttg 1762785  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 29501636 - 29501672
Alignment:
Q  175 cacaacagttttttggcgcgcatgctttcaaaaagaa 211  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  29501636 cacaacagttttttggcgcgcttgctttcaaatagaa 29501672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 354
Target Start/End: Original strand, 44072442 - 44072592
Alignment:
Q  204 aaaaagaacatttgagcttgctttcaagttatttggttggcatgtctttggatcattaggaaagaacgcaactcaagaatttttaaca--ataatattga 301  Q
    |||||||||||||| ||||||||||| |||||||||||||  ||||||||| ||||  | |||| |||||| |   || | |  ||||  |||||   ||    
T  44072442 aaaaagaacatttgcgcttgctttcaggttatttggttggtctgtctttgggtcatctgaaaaggacgcaatt--tgagtgtccaacaacataatggcga 44072539  T
Q  302 ctcttgatcaacttcttcatagtattaagctccattcttggtggtagttgaag 354  Q
    ||||||||||||||||| ||||||||||||| |||| || ||||| |||||||    
T  44072540 ctcttgatcaacttcttgatagtattaagcttcattttttgtggtggttgaag 44072592  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 16125881 - 16125795
Alignment:
Q  185 ttttggcgcgcatgctttcaaaaagaacatttgagcttgctttcaagttatttggttggcatgtctttggatcattaggaaagaacg 271  Q
    ||||| ||| ||| ||||||| ||||||||||| ||||||||| | ||| |||||||||| ||||||||  |||||  |||||||||    
T  16125881 ttttgccgcacatactttcaataagaacatttgtgcttgcttttaggttgtttggttggcctgtctttgtgtcatttcgaaagaacg 16125795  T

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