View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_high_2 (Length: 701)
Name: NF18950_high_2
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 321 - 656
Target Start/End: Complemental strand, 10215256 - 10214925
Alignment:
| Q |
321 |
gatcccaagatataaatttatttgagtagtaatatctcttatttctaattgatcaaaaatccttattgtctcc-aaagaaaactctctaaaacaatagtt |
419 |
Q |
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| T |
10215256 |
gatcccaagatataaatttatttgagtagtaatatctcttatttctatttgatcaaa--tccttattgtctcccaaagaaaactctctaaaacaatagtt |
10215159 |
T |
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| Q |
420 |
ataggtaatcgaaataatagatatattattcaccttttatgttttcttttaaattaaatattgacattttacaaatctaagttagaaaagtggatgtcca |
519 |
Q |
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| T |
10215158 |
ataggtaatcgaaataatagatatattattcacctttt--gttttcttttaaattaaatattgacattttacaaatctaagttagaaaagtggatgtcca |
10215061 |
T |
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| Q |
520 |
ttatgttcaagtaaaccagcaacttactacaatgacccgaaacgtgtcccaatgttaaagtccattgttacccttgggaacatagttacctagcatatcc |
619 |
Q |
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| T |
10215060 |
ttatgttcaagtaaaccagcaacttactacaatgacccgaaacgtgtcccaatgttaaagtccattgttaccctt-ggaacatagttacctagcatatcc |
10214962 |
T |
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| Q |
620 |
acagacttaattaaaacactttaccaaacccaaaaat |
656 |
Q |
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| T |
10214961 |
acagacttaattaaagcactttaccaaacccaaaaat |
10214925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 10215580 - 10215405
Alignment:
| Q |
5 |
taataaaatgttgaggacaagaaaaactcacctgaggagagtttctactcaaaatattgaaagaaagaaaagatgatgatgctctacaagtctacaacta |
104 |
Q |
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| T |
10215580 |
taataaaatgttgaggacaagaaaa-ctcacctgaggagaatttctactcaaaatattgaaagaaagaaaagatgatgatgctctacaagtctacaacta |
10215482 |
T |
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| Q |
105 |
aagatttatgtgttatttagtcttttacttctaaataatataaaaaataagtgccaaggatttgattcatctaaagt |
181 |
Q |
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| T |
10215481 |
aagatttatgtgttatttagtcttttacttctaaataatataaaaaataagtgccaaggatttgattcatctaaagt |
10215405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 551 - 656
Target Start/End: Original strand, 10100503 - 10100607
Alignment:
| Q |
551 |
atgacccgaaacgtgtcccaatgttaaagtccattgttacccttgggaacatagttacctagcatatccacagacttaattaaaacactttaccaaaccc |
650 |
Q |
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| T |
10100503 |
atgacccgaaacgtgtcacaatgttaaagtccattgttaccctt-gaagcatagttacgtggcacctccacaaacttaattaaagcactttaccaaaccc |
10100601 |
T |
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| Q |
651 |
aaaaat |
656 |
Q |
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|||||| |
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| T |
10100602 |
aaaaat |
10100607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 10215381 - 10215321
Alignment:
| Q |
196 |
ttagagtataatggtatatatattttgtgacttaaagactagatgcacttttttacttaca |
256 |
Q |
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| T |
10215381 |
ttagagtataatggtatatatattttgtgacttaaagactagatgcacttttttacttaca |
10215321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 516
Target Start/End: Original strand, 10099930 - 10100014
Alignment:
| Q |
425 |
taatcgaaataatagatatattattcaccttttatgttttcttttaaattaaatattgacattttacaaatctaagttagaaaagtggatgt |
516 |
Q |
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| T |
10099930 |
taatcaaaataatagatatattattcacctttt---ttttaattt----taaatattgacattttacaaatttaaattagaaaagttgatgt |
10100014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 10099111 - 10099175
Alignment:
| Q |
18 |
aggacaagaaaaactc--acctgaggagagtttctactcaaaatattgaaagaaagaaaagatgatg |
82 |
Q |
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| T |
10099111 |
aggacaagaaaaactctcacctgaggagagtttctactc--aatattagaagaacgaaaagatgatg |
10099175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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