View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_high_20 (Length: 294)
Name: NF18950_high_20
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 6840666 - 6840930
Alignment:
| Q |
1 |
tataagcaggattataatgaactgtgatccagttaaaaggaggaggatggacaggggtccatgactgagtgcttagatcataaacttctactcccgaagc |
100 |
Q |
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| T |
6840666 |
tataagcaggattataatgaattgtgatccagttaaaaggaggaggatggacaggggtccatgactga-----------ataaaattctgctcccgaagc |
6840754 |
T |
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| Q |
101 |
ataaagcatcggcttcccaacgacaacgtcatgttgaagtctaacaactttgaaattatttatatccttaaaggcacaaaaaccatacaaggaatcatca |
200 |
Q |
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| T |
6840755 |
ataaagcatcggcttccctacgacaacgtcatgttgaagtctaacaactttgaaattatttatatccttaaaggcacaaaaaccatacaaggaatcatca |
6840854 |
T |
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| Q |
201 |
tatttagagtcagagaatgagggtgcagga-gggatacggtgaacttgtttaactgttgggttccatagaatcaagt |
276 |
Q |
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| T |
6840855 |
tatttaga-tcagagaatgagggtgcaggaggggatacggtgaacttgtttaactgttgggttccatagaatcaagt |
6840930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 276
Target Start/End: Complemental strand, 1178100 - 1177950
Alignment:
| Q |
132 |
tgttgaagtctaacaactttgaaattatttata------tccttaaaggcacaaaaaccatacaaggaatcatcatatttagagtcagagaatgagggtg |
225 |
Q |
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| T |
1178100 |
tgttgaagtctaacaactttgaaattaatgctacagtcgtcgttaaatgcacagaaaccatacagggaatcatcatacttagagtgacagaatgagggtg |
1178001 |
T |
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| Q |
226 |
caggagggatacggtgaacttgtttaactgttgggttccatagaatcaagt |
276 |
Q |
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| T |
1178000 |
cagggggtataaggtggacctgtttagttgttgggttccatagaatcaagt |
1177950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 1178183 - 1178140
Alignment:
| Q |
46 |
gatggacaggggtccatgactgagtgcttagatcataaacttct |
89 |
Q |
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| T |
1178183 |
gatggacaggggtccatgatttagtgcttagatcatacacttct |
1178140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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