View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_high_3 (Length: 644)
Name: NF18950_high_3
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 22 - 633
Target Start/End: Complemental strand, 28661749 - 28661143
Alignment:
| Q |
22 |
ttgatctgaaaaagcatgaagtttgattcttaagatagtaacaaaagcaattttcataattgtttttcagttataatcacagttcacatactatagaaac |
121 |
Q |
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| T |
28661749 |
ttgatctgaaaaagcatgaagtttgattcttaagatagtaacaaaagcaattttcatacttgtttttcagttataatcacagt-cacatagtatagaaac |
28661651 |
T |
|
| Q |
122 |
acagtaaatagtacttgaaactaaagaatttaatgtactatatcnnnnnnnnnttgttaatttggaccataaaagaacgtggaaaactgcatggtgtgca |
221 |
Q |
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| T |
28661650 |
acagtaaatagtacttgaaactacagaatttaatgtactatatcaaaaaaatattgttaatttggaccataaaagaacgtggaaaactgcatggtgtgca |
28661551 |
T |
|
| Q |
222 |
tgcaaagcttcaactttttcctagtagtatagttttatttcttcnnnnnnnnnnctctctcttctcttatgcatattactttatannnnnnnattataag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
28661550 |
tgcaaagcttcaactttttcctagtagtatagttttatttcttctttttttt--ctctctcttctcttatgcatattactttatatttttttattataag |
28661453 |
T |
|
| Q |
322 |
gtattctataaacttataactgacatattctttacttgtgcttctataatatctctatatgacaaagttatatactgcatcttatgatttcttttgttaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28661452 |
gtattctataaacttataactgacatattctttacttgtgcttctataatatctctatatgacaaagttatatactgcatcttatgatttcttttgttaa |
28661353 |
T |
|
| Q |
422 |
tgtaatgagacaaaagtcttatacctacctacttatggtccaaatcacttttttaattaattaattcnnnnnnnnnnagtgatattggtctttgtcaatt |
521 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28661352 |
tgtaatgagacaaaagtcttatacctacctacttatggtccaaatcacttttttaattaattaattc--ctttttttagtgatattggtctttgtcaatt |
28661255 |
T |
|
| Q |
522 |
tttgtccttgttatgttccatgatctagaattattagattcttctcataatccatgaaggtttgtacaccctcataaagcagtaattcttctatcctatc |
621 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28661254 |
tttgtccttgttatgtttcatgatctagaattattagattcttctcataatccatgaaggtttgtacaccctcataaagcagtaattcttctatcctatc |
28661155 |
T |
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| Q |
622 |
tatcactttcat |
633 |
Q |
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|||||||||||| |
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| T |
28661154 |
tatcactttcat |
28661143 |
T |
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