View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_high_31 (Length: 249)
Name: NF18950_high_31
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 53479331 - 53479199
Alignment:
| Q |
112 |
ttaacctaaagaatcttccatnnnnnnnncataaccaaaacacagaacgaattttttgggagaaaaatgaattgcaattaaatttagaataggttcatca |
211 |
Q |
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| T |
53479331 |
ttaacctaaagaatcttccataaaaaaaacataacgaaaacacagaacgaattttttgggagaaaaatgaattgcaattaaatttagaataggttcatca |
53479232 |
T |
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| Q |
212 |
ag---tcattcattagaattagagtagaataat |
241 |
Q |
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| T |
53479231 |
agttttcattcattagaattagagtagaataat |
53479199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 53479451 - 53479362
Alignment:
| Q |
26 |
caccaatcacaactttttaattgactacaaacaaaaacattgtttttgaggggaaaaaacattcttattattttcgccttagaattttaa |
115 |
Q |
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| T |
53479451 |
caccaatcacaactttttaattgactacaaacaaaaacattgtttttgaggggaaaaaacattcttattattttcgccttagaattttaa |
53479362 |
T |
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