View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_high_4 (Length: 581)
Name: NF18950_high_4
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 147 - 538
Target Start/End: Complemental strand, 3214720 - 3214331
Alignment:
| Q |
147 |
aaagaattatgtaactaactagagagagaatctaaaagatgcaactaaattatatttctatgtatattgaattacaattcatgaaggtctcttgcatata |
246 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
3214720 |
aaagaattttgtaactaactagagagagaatgtaaaagatgcaactgaattatatttctatgtat--tgaattacaattgatgaaggtctcttgcttata |
3214623 |
T |
|
| Q |
247 |
tagcactgagatccttacctactatagcaggttacaatagtgacatgtgtcagttagttacagttgcatcttaatggatctaaataagcctaatagttct |
346 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||| |||| |
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| T |
3214622 |
tagcactgagatccttacctgctatagcaggttacaatagtgacatgtgttagttagttacaactgtatcttaatggatctaactaagcctaatacttct |
3214523 |
T |
|
| Q |
347 |
tatactctaatacaaactgatcaaatccaatccaacaaaaaagcgggtctgaacaaaaggcaatgatctacctactatattatggacacgctctagaggc |
446 |
Q |
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| T |
3214522 |
tttgctctaatacaaactaatcaaatccaatccaacaagaaagcgggtctgaacaaaaggcaatgatctaccgactatattatggacacgctctagaggc |
3214423 |
T |
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| Q |
447 |
acatgtaagcaagtcttgagacggaatcaggaccgtatgatgataatcacatcatgatttataagcaattgcctcgaatgatagttgctcaa |
538 |
Q |
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| T |
3214422 |
acatgtaagcaagtcttgagacggaatcaggaccgtatgatgataatcacatcatgatttataagcaattgcctcgaatgatagttgttcaa |
3214331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 3221557 - 3221320
Alignment:
| Q |
19 |
gcatcataaacttttcaactcttaaattgtagtgctatgttatatacgataagnnnnnnnnc--tagctagagaaatgatgagcgattcaaactgatcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| || ||||||||||| |
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| T |
3221557 |
gcatcataaacttttcaactcttaaattgtagtgctctgttatatacgataagataaaaaaaattagctagagaaatgacgagcgttttaaactgatcaa |
3221458 |
T |
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| Q |
117 |
atccaatccaaatgacgagtgtttcaaatcaaagaattatgtaactaactagagagagaatctaaaagatgcaactaaattatatttctatgtatattga |
216 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||| |
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| T |
3221457 |
atccaattcaaatgacgagtgtttcaaactaaagaattatgtaagtaactagagagagaatgtaaaagatgcaacttaattatatttctatg--tattga |
3221360 |
T |
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| Q |
217 |
attacaattcatgaaggtctcttgcatatatagcactgag |
256 |
Q |
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| T |
3221359 |
attacaattgatgaaggtctcttgcttatatagcactgag |
3221320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 250 - 358
Target Start/End: Complemental strand, 3220048 - 3219940
Alignment:
| Q |
250 |
cactgagatccttacctactatagcaggttacaatagtgacatgtgtcagttagttacagttgcatcttaatggatctaaataagcctaatagttcttat |
349 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||||||||||||||||| |
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| T |
3220048 |
cactgagatccttacctgctatagcaggttgcaatagtgacatgtgttagttaattacagttgtatcttaatagatctaactaagcctaatagttcttat |
3219949 |
T |
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| Q |
350 |
actctaata |
358 |
Q |
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||||||||| |
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| T |
3219948 |
actctaata |
3219940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 535 - 565
Target Start/End: Complemental strand, 3214269 - 3214239
Alignment:
| Q |
535 |
tcaaaatacatacacattccctacacttcat |
565 |
Q |
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| T |
3214269 |
tcaaaatacatacacattccctacacttcat |
3214239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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