View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_high_9 (Length: 443)
Name: NF18950_high_9
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 53479587 - 53479775
Alignment:
| Q |
55 |
aatgcttgggagttaaggcaaggagatcatttgtcttctatatatcttgtttttattagccattgaaagatttaattctttgattcgtgcatcctcaaat |
154 |
Q |
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| T |
53479587 |
aatgcttgagagttaaggcaaggagatcatttgtcttctatatatcttgtttttattagccattgaaagatttaattctttgattcgtgcatcctcaaat |
53479686 |
T |
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| Q |
155 |
tttaggtgtataaggattttcaaattagtaatgtttagaattttcctattagagtttgctgatgacacgttgctgctatgtgaaaagag |
243 |
Q |
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| T |
53479687 |
tttaggtgtataaggattttcaaattagtaatgtttagaattttccttttagagtttgctgatggcacgttgctgctatgagaaaagag |
53479775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 251 - 426
Target Start/End: Original strand, 53479895 - 53480070
Alignment:
| Q |
251 |
cccatttaagtatttgtgtttgtcaattggagataatccaagtaggctgtcaatttttaaccgtgtgattgatagaattttagggaaattttatatgcgg |
350 |
Q |
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| T |
53479895 |
cccatttaagtatttgtgtttgtcaattggagataatccaagtaggctgtcaatttttaaccgtgtgattgatagaattttagggaaattttatatgcgg |
53479994 |
T |
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| Q |
351 |
aagtttcacaatttatccacaggagctcgtctcatttttctcgaagctgttattttgtgttactgatgtactctct |
426 |
Q |
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| T |
53479995 |
aagtttcacaatttatccacaggagctcgtctcatttttctcgaagcttctattttgtgttactaatgtactctct |
53480070 |
T |
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