View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_10 (Length: 451)
Name: NF18950_low_10
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 101 - 441
Target Start/End: Original strand, 29801051 - 29801390
Alignment:
| Q |
101 |
tattttttatgtcaatgtgaaacagacctccatattatttcaatgcatattgatagcagttgaaaataaaatttattacgaacaatcctccatattattg |
200 |
Q |
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| T |
29801051 |
tattttttatgtcaatgtgaaacagacctccatattattgcaatgcatattgatagcagttgaaaataaaatttattaa-aacagtcctccatattattg |
29801149 |
T |
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| Q |
201 |
caaattaaagacgattacaaaatgggatcaaaccatgatctctcataaggatattctcaaactttttaacaaggtttagtgcaaaagcatctctgacgaa |
300 |
Q |
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| T |
29801150 |
caaattaaacacaattacaaaatgggatcaaaccatgatctctcatagggatattctcaaactttttaacaaggtttagtgcaaaagcatctctgacgga |
29801249 |
T |
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| Q |
301 |
ggccttcgcattgtcctccaggaaaaccctcagtttggcacacagaagcacaattggtgtcactcacacatagtcctttgaagttgttacttggagtctc |
400 |
Q |
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| T |
29801250 |
agccttcgcagtgtcctccaggaaaaccctcagtttggcacacagaagcacaattggtgtcactcacacatagtcctttgaagttgttacttggagtctc |
29801349 |
T |
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| Q |
401 |
acaagtccttgcttctgccaccataattggacccatctctg |
441 |
Q |
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| T |
29801350 |
acaagtccttgcttctgccaccataattggccccatctctg |
29801390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 189 - 413
Target Start/End: Original strand, 29804283 - 29804511
Alignment:
| Q |
189 |
tccatattattgcaaattaaagacgattacaaaatgggatcaaaccatgatctctcata-----aggatattctcaaactttttaacaaggtttagtgca |
283 |
Q |
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| T |
29804283 |
tccacattattccaaattaaacacaattacaaaaggtgatgaaatcatcatctctcatatatataggatcttctcaa-cattttaacaaggtttagtgca |
29804381 |
T |
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| Q |
284 |
aaagcatctctgacgaaggccttcgcattgtcctccaggaaaaccctcagtttggcacacagaagcacaattggtgtcactcacacatagtcctttgaag |
383 |
Q |
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| T |
29804382 |
aaaacatctctgacggaagcctttgcagtgtcctccagggaaaccctcagtttggcacacagaagcacaattggtgtcactgaagcatgctcctttgaag |
29804481 |
T |
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| Q |
384 |
ttgttacttggagtctcacaagtccttgct |
413 |
Q |
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| T |
29804482 |
ctgttacttggagtctcacaagtccttgct |
29804511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 32138594 - 32138702
Alignment:
| Q |
189 |
tccatattattgcaaattaaagacgattacaaaatgggatcaaaccatgatctctcataaggatattctcaaactttttaacaaggtttagtgcaaaagc |
288 |
Q |
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| T |
32138594 |
tccatattattgcaaattaaaagcaattacaaaaggtgatggaatcataatctctcatg-gaatattctcaaacttttaaacaaggtttagagcaaaaac |
32138692 |
T |
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| Q |
289 |
atctctgacg |
298 |
Q |
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|||||||||| |
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| T |
32138693 |
atctctgacg |
32138702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 430
Target Start/End: Original strand, 29808662 - 29808827
Alignment:
| Q |
265 |
tttaacaaggtttagtgcaaaagcatctctgacgaaggccttcgcattgtcctccaggaaaaccctcagtttggcacacagaagcacaattggtgtcact |
364 |
Q |
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|||||||| || |||||||||||||||| |||| | || ||| |||||||||| |||| || |||||||||||||||||||| ||| ||||| |
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| T |
29808662 |
tttaacaatgtgtagtgcaaaagcatctacgacggaatccacggcagtgtcctccagagaaacgttctgtttggcacacagaagcacagttgtgatcact |
29808761 |
T |
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| Q |
365 |
cacacatagtcctttgaagttgttacttggagtctcacaagtccttgcttctgccaccataattgg |
430 |
Q |
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| T |
29808762 |
agcacatggccctttgaatttgtgactttgtgactcacaagttcttgcttctgccaccatacttgg |
29808827 |
T |
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