View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18950_low_12 (Length: 442)
Name: NF18950_low_12
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 6 - 426
Target Start/End: Original strand, 46128377 - 46128797
Alignment:
| Q |
6 |
gtgagatgaaatattagtttgaaaatataaggaaaacagaaatgttagttaaaatggcgcgaatgaaagaagcagttgaagctgttatatacaagagaga |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46128377 |
gtgagataaaatattagtttgaaaatataaggaaaacagaaatgttagttaaaatggcgcgaatgaaagaagcagttgaagctgttatatagaagagaga |
46128476 |
T |
|
| Q |
106 |
gaaaaacactcgttcattgattttgttacatcttcactgaaacttgaactccacgttttcttctctaattctctgctaagaaaccaaagaaagaaagaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46128477 |
gaaaaacactcgttcattgattttgttacatcttcactgaaacttgaactccacgttttcttctctaattctctgctaagaaaccaaagaaagaaagaaa |
46128576 |
T |
|
| Q |
206 |
gaatgtctctgagagatgatacttcttcagcatcctcctcatctcagaggaagaatgtctctaccggagttgagtcggaagatggtcatcggaggtggag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46128577 |
gaatgtctctgagagatgatacttcttcagcatcctcctcatctcagaggaagaatgtctctaccggagttgagtcggaagatggtcatcggaggtggag |
46128676 |
T |
|
| Q |
306 |
agatcgcggctttaacatgatacggaagaatatacttcctggaaaaccatctttttccaggaggcgaaagttttttcgtgaagatacttcttctccaatg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46128677 |
agatcgcggctttaacatgatacggaagaatatacttcctggaaaaccatctttttccaagaggcgaaagttttttcgtgaagatacttcttctccaatg |
46128776 |
T |
|
| Q |
406 |
cccactgaggatcctcctttc |
426 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46128777 |
cccactgaggatcctcctttc |
46128797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 426
Target Start/End: Original strand, 46701154 - 46701562
Alignment:
| Q |
14 |
aaatattagtttgaaaatataaggaaaacagaaatgttagttaaaatggcgcgaatgaaagaagcagttgaagctgttatatacaagagagagaaaaaca |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
46701154 |
aaatatcagtttgaaaatataaggaaaacagaaatgttagttaaaatggcgcgaaagaaagaagcagttgaagctgttatatagaagagagaaaaaaaca |
46701253 |
T |
|
| Q |
114 |
ctcgttcattgattttgttacatcttcactgaaacttgaactccacgttttcttctctaattctctgctaagaaaccaaagaaagaaagaaagaatgtct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46701254 |
ctcgttcattgattttgttacatcttcactgaaacttgaactccacgttttcttctctaattctctgctaagaaacc----aaagaaagaaagaatgtct |
46701349 |
T |
|
| Q |
214 |
ctgagagatgatacttcttcagcatcctcctcatctcagaggaagaatgtctctaccggagttgagtcggaagatggtcatcggaggtggagagatcgcg |
313 |
Q |
| |
|
|| |||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||| |
|
|
| T |
46701350 |
cttagagctgatacttcttcatcatcctcctcgtctcagaggaagaatgcctctaccggagttgagtcggaagatggtcatcggaggaggagagctggcg |
46701449 |
T |
|
| Q |
314 |
gctttaacatgatacggaagaatatacttcctggaaaaccatctttttccaggaggcgaaagttttttcgtgaagatacttcttctccaatgcccactga |
413 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| | ||||||| |||||||||||||||||||||||||| |
|
|
| T |
46701450 |
gctttaacatgatatggaagaatatacttcctggaaaaccatctttttccaaaaagcgaaagctctttcgtgccgatacttcttctccaatgcccactga |
46701549 |
T |
|
| Q |
414 |
ggatcctcctttc |
426 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
46701550 |
gggtcctcctttc |
46701562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 426
Target Start/End: Original strand, 46122710 - 46122770
Alignment:
| Q |
366 |
gaggcgaaagttttttcgtgaagatacttcttctccaatgcccactgaggatcctcctttc |
426 |
Q |
| |
|
|||| ||||||||||||| ||||| |||| ||||||||||| || |||||||||||||||| |
|
|
| T |
46122710 |
gaggagaaagttttttcgagaagaaactttttctccaatgctcaatgaggatcctcctttc |
46122770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University