View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_16 (Length: 388)
Name: NF18950_low_16
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 8290308 - 8289937
Alignment:
| Q |
1 |
atattcgactgttcccaaaaaatgatatatattcgattctgatgcagtgcatgaaatggacaaaatttgatagaataaggtggacatgttaaaaagtctc |
100 |
Q |
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| T |
8290308 |
atattcgactgttcccaaaaa-tgatatatattcgattctgatgcattgcatgaaatggacaaaatttgatagaataaggtggacatgttaaaaagtctc |
8290210 |
T |
|
| Q |
101 |
aagtctcaacaagttcataggttgttattagcttatgctgcaagagtgtttcacattag-nnnnnnnnnnnaactatgcatatgacacaccaaaaaccgg |
199 |
Q |
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| T |
8290209 |
aagtctcaacaagttcataggttgtta------tatgctgcaagagtgtttcacattagttttttttttttaactatgcatatgacacaccaaaaaccgg |
8290116 |
T |
|
| Q |
200 |
ttgagattactaatttaaaccaagtttgcttagtgtaaatagaagtttttagttagtttgtgtttgcaattaannnnnnnncctcgtttttacttgttgc |
299 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8290115 |
ttgagattactaattcaaaccaagtttgtttagtgtaaatagaagtttttagttagtttgtgtttgcaattaattttttttcctcgtttttacttgttgc |
8290016 |
T |
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| Q |
300 |
ataagtaactgcattaggagtagtatttttcttggttagtaaacttatgacccaaatcacataaatcatgatagtatta |
378 |
Q |
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| T |
8290015 |
ataagtaactgcattaggagtagtatttttcttggttagtaaacttatgacccaaatcacataaatcatgatagtatta |
8289937 |
T |
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