View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_17 (Length: 361)
Name: NF18950_low_17
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 5 - 343
Target Start/End: Complemental strand, 28981119 - 28980782
Alignment:
| Q |
5 |
tgtccaagaatatcaacatccaaaagatgagtggcttcctatcacagaatccagaaatggtaatgccagatttgcaacttatcatattcttaattccaac |
104 |
Q |
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| T |
28981119 |
tgtccaacaaaatcaacatccaaaagatgagtggcttcctatcacagaatccagaaatggtaatgccagatttgcaacttatcatattcttaattccaac |
28981020 |
T |
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| Q |
105 |
attggatttcaagctctcatgcttcctgtggcctttgcaactcttggttggtacgtatcctaacctaacacttaggtaacagtaacattattattacgaa |
204 |
Q |
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| T |
28981019 |
attggatttcaagctctcatgcttcctgtggcctttgcaactcttggttggtacgtatcctaacctaacacttaggtaacagtaaca-tattataccgaa |
28980921 |
T |
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| Q |
205 |
tcagtacttttcaaagtaaccaaaggaaaaatcagtactacttttcaaaagattgtgtcatatacgttgcttattaaataagttagttagctttaaataa |
304 |
Q |
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| T |
28980920 |
tgagtacttttcaaagtaaccaaaggaaaaatcagtgctacttttcaaaagattgtgtcatataggttgcttattaaataagttagttagccttaaataa |
28980821 |
T |
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| Q |
305 |
gttagttagcttcagacttttcatgatcttccttgacaa |
343 |
Q |
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| T |
28980820 |
gttagttagattcagacttttcatgatcttccttgacaa |
28980782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 28985661 - 28985544
Alignment:
| Q |
77 |
tgcaacttatcatattcttaattccaacattggatttcaagctctcatgcttcctgtggcctttgcaactcttggttggtacgtatcctaacctaacact |
176 |
Q |
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| T |
28985661 |
tgcagcttttcatgttcttaattccaacactggatttcaagctctcatgcttcctgtggcctttgcaactcttggttggtacgtatattaa--taatact |
28985564 |
T |
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| Q |
177 |
taggtaacagtaacattatt |
196 |
Q |
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| T |
28985563 |
taggtaacactaacattatt |
28985544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 28985505 - 28985454
Alignment:
| Q |
209 |
tacttttcaaagtaaccaaaggaaaaatcagtactacttttcaaaagattgt |
260 |
Q |
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| T |
28985505 |
tacttttcaaagcaaccaaaagaaaaatcagtactacttgtcaaaggattgt |
28985454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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