View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_18 (Length: 357)
Name: NF18950_low_18
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 4570809 - 4570466
Alignment:
| Q |
1 |
ctgtttttatattaggtaaagaatttctattcgaaagtcaactgtcaaggttaggtgggaaatttcaatatgttaacacattaatcatttgttgagtcct |
100 |
Q |
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| T |
4570809 |
ctgtttttatattaggtaaagaatttctattcgaaagtcaactgtcaaggttaggtgggaaatttcaatatattaacacattaatcatttgttgagtcct |
4570710 |
T |
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| Q |
101 |
accagcccttcttagcttgcttgagtttcgtatatgttaaaaggacttatgtgcatcatttaaaacttataaggataacattttaactgttacaactact |
200 |
Q |
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| T |
4570709 |
accagcctttcttagcttgcttgagtttcgtatatgttaaaaggacttatgtgcatcatttaaaacttataaggataacattttaacagttacaactact |
4570610 |
T |
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| Q |
201 |
gaaccagaactgaaatatcaactaaaatttctccatatttagtagttgctgaaaacaaaattcattcccacgatctcactgttgggaccagaaattaaga |
300 |
Q |
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| T |
4570609 |
gaaccagaactgaaatttcaactaaaatttctccatgtttagtagttgttgaaaacaaaattcattcccacgatctcactgttgggaccagaaattaaga |
4570510 |
T |
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| Q |
301 |
caataagaaatttgtacggtacttaactacaacatgagtttttt |
344 |
Q |
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| T |
4570509 |
cagtaagaaatttgtacggtacttaactacggcatgagtttttt |
4570466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 40842025 - 40841935
Alignment:
| Q |
124 |
agtttcgtatatgttaaaaggacttatgtgcatcatttaaaacttataaggataacattttaactgttacaactactgaaccagaactgaa |
214 |
Q |
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| T |
40842025 |
agttttgtatatgtcaaaaggacctaactgcatcttttaaaacttacaaggacaacattttaacaattactactagggaaccagagctgaa |
40841935 |
T |
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